cdh7a (cdh7,LOC108432272,LOC107584702,LOC107602530)


Basic Information

Item Value
gene id cdh7a
gene name cdh7,LOC108432272,LOC107584702,LOC107602530
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2422004 ~ 2510072 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941430.2
CGAGCGACACTTTTGGCTCTGCCTGTGACAGAGTGTGTATCGGGGCGCGCtgcgtgtgcgtgcatgtgtgtgtgtgtgtgagagagagagagactgagcgagagagacagagagagagtgtgtgtgagtgtgtatttgtgtgtgtgtgtgtatgtcttctGGCCGAGCTTCTCTGCAGCTGCGACTCTTCAATGGACCTCATTGTCGCGGTGTCGCGCTCGTAGGCGTGCGGGAACCTCGCGTGCAGAAACCTTGCGTGCGGGAAACCTCGCGTGCGCGGCGGACGCTCCGGGTCTTGCGGTTTTGCGTTGCGCGTGGCACCGTCGGGAGCGCAGCTGTACCTGCAACACTCctacttcttttcttttctttctttttttctttctttcttcttgttcTGCTGGAGAAACCAGAGAGAAGCTTTTAAACTCGGAGCACGGGATCCTGGGGCTCTGCGTTAACACCGGGTGCACGCGCTTGGAGGTGACGGACTGGCATTCCTGATTCAGCCGTGATCAACATTCACTTCTCCTGTGGTCCATCTCATCAATCACTGCTGCTCCTCGTCTCCACTGCCTTTCCACACAGAGAACAAACTCCGGAGCAAACCATCCACTGCTGGATATCTTGTGCCTCTTTGTCACCCCACATCGACTTTTTCTCACCCTTCGTTTTTCTCCTCCGGCCCACACCATGAGCAGGAGGAGCTGTGGGGAATGGAGTGGACTGACAGCACTCAGCATGTTGGTGCTGGTCCAGTGGGCGGGCAGCTGCTGGGCCATGACGCTGAACTCGGTTCCTCTGCGTCCAGTACCGCCGCATCAAGCAGAGTTGAGGATGAGGACACGGTACTCCACAGACACAAGAGGAACTGGGTGTGGAACCAGTTCTTCGTCCTGGAGGAGTACACGGGAGACGACCCTCTCTACGTCGGCAAGTTGCACTCTGATGTGGATAAAGGTGAAGGCAGGATAAAGTACGTCCTCACTGGTGAAGGAGCCACCACCATTTTCACAATCGACGAGAACACAGGTGACATCCACGCCACCAAACGCCTGGACCGAGAGGAGCAAGCCTACTACACACTACGTGCTCAGGCCCGCGACCGCGCCACCAACCTGCCCGTCGAACCCGAGTCCGAATTCGTCATCAAGGTGCAGGACATCAATGACAACGAGCCTCGGTTTCCTGATGGACCGTACCAAGCGCACGTGCCCGAAATGTCTCCAGTGGGTACGTCGGTGGTGGAGGTGAAGGCAACGGATGCAGATGATCCCACATACGGCAACAGCGCCAGAGTCGTCTACAGCATCCTGGAAGGCCAGCCGTATTTCTCAGTGGAACCCAAGACAGGTATCGTGAGGACGGCGCTGCCCAACATGGACCGCGAGGCGAGGGACCAGTACCTGCTCGTCATCCAGGCTAAGGACATGGGAGGCCAGATGGGTGGCCTCTCAGGAACCACGTCCGTCACCGTCACCTTAACCGACGTGAACGATAATCCTCCACGCTTTTCACGAAaatCCTATCAGTTCAGCGTGCCCGAGTCGCTGCCTGTGGCTTCCGTGGTGGCCAAGATAAAGGCCTTGGATGCAGACGTGGGCCCCAACGCTGAGATGGAGTACAGAATTATCGAAGGAGACGGCCTCGGGGTTTTCAGGGTCGAGCCAGACAAAGACACTCAGGAAGGAGTCATAACTCTGCTGAAGGGTCTTGACTTTGAAACAAAGTCGAGTTACACTCTAAAAATCGAAGCGTCTAACAAACACATGGATCCTCGCTTCCGAGCGCAGGGGCCGTTCAGCGACACGGCGATGGTCAGGCTGGTGGTGGAGAACGTGGACGAGCCGCCGGTTTTCTCCACGCCCGTCAGCAGGATGGTGGTCTCCGAGGCGGCTAAAGTGGGCACCATCATCGGCACGGTTTCCGCCATGGACCCCGACTCCACTAACAGCCCCATCAGGTACTCGATAGACCGGAACACTGATCTGGAGCGTTTCTTCAACATCGAAGCTGCGACTGGAATCATCAGCACGGCCAAGCCTTTAGACCGAGAGATGAATGCGGTGCACAACATCACCATCCTCGCCATTGAAAGCCTGGACCCATCGCAGGTGGGGAAAGGAATCACGCTCATCACGGTGATGGACGTCAATGATAACGCTCCTGTCTTCGCCATAGAGTACGAGACGTTCCTGTGCGAGACCGCTGGACCAGGCCAGGTGATCGAGACAGTGAGCGCGGTGGATAAAGACGAGCCTCCCAGCGGCCATCGCTTCTTCTTCTCCCTGACTGCAGAGGCTGCTGGGAACCACAACTTCACCCTGCGGGACAACAAAGATAACACAGCATCCATCCTGACTAAGCGCGGAGGATTTCACAGGCGAGAGCAGCCGCTGTACCGTCTGCCTGTGCTGATAGTGGACAGCGGGAGTCCGTCTCTCAGCAGCACTAACACTCTGTCCATccgggtgtgtgagtgtgactcTGATGGAGCTCCGCAGGCCTGTGGCACCGAGGCTTTCCTCCTGACAGCCGGACTCAGCACCGGAGCACTCACAGCCATCCTGGCCTGCATCATGACACTGCTCGTGCTTGTGCTGCTGATTGTGACGGTACGGCGGAGGAAGAAAGAGCCGCTGATTGTGGACGATGAGCGAGACGTGCGTGAGAACATTGTGCGCTACGATGACGAGGGAGGCGGAGAGGAAGACACTGAGGCCTTCGACATGGCGGCTCTGCGCCACCTCAACGCCACGCGGGAGAGTAAAACGCGCCGTGACGTGACTCCTGACATGCCTGCCGTACCCACCCTGTACCACACCCGCCCCCCGCCGTACAAAATGGCTCCCGATAACGGCGTTTTCCGCGAGTTCATATGGGAGCGGCTGAAGGAGGCGGACGTGGACCCTTCAGCTCCACCGTATGACTCGCTCCAGACGTATGCCTTCGAGGGCAGCGGCTCGGCGGCGCAGTCGCTCAGCTCTCTCGAGTCGCTCAGCACCGACTCAGAGCACAACTACGACTTCTTGAGCGACTGGGGGCCACGTTTCAAAAAGCTGGCTGATCTCTACGGCCACAGCGAAGCCAGCAACGTGTTCTCCTCCTAGCTGGAGAGTCGATCAGTTCAACAGAAACGAAAACGAACAGTCACCGAGTGCCAATGACTCACCAGTCCTCGAAGGAAGGCAGGAGGGACACTTTTTATTCCAACAAAAATggatggtggaaaaaaaagacaacataaATGAACAACCAGTGACAGATGCCAGAAATGGCATGATCCCCAAAAGAGGTGggaggaagaataaaaaaatatggaaCATTCATGTGTGGGAGGAGAAATATTGGCATCGATTTCCCAACGAAACGTCAATAATCCTCTCTGAGGACAGATTGTGGATTCTTACATTGTGGCACTTGGATTTAAACCCACAATAAGATGCCAAGCTCAGACACAGACAGGATCTAGCGGGGATAAAGGGCAGAGAGGGTGGAGGCGTGCGCGAGAGTCCGTCCTGGAATTTGTTTTGCAGTGACTTTCCGAGGCGGTGATGAATCAGAACAGTCCTGCCTGGCAAGCCGGCTCTGCTGCCTCGTAACCCGTGTTCTCCAACGGTATCTCAACGTTTCTGTTCTCTCACATATTTCTATGACTCACAGCTTCTTCAGccacaaaaaaatcaatatgaatTAAGTCCTCAAAATACTCTCGAAAGACATATTGCCTTGTGAGGTAATGCAACTGTCGCAGTGTAAAATATCTTTCATCTGACATCAGGCTTTAGTTTCATATGAAATAAAGCATCAGTGTTGATGAAAAATAGCCAAACCACTGATTTAGCGGGAAAAAAAGGGGTTTACGTGTACGATATTGCTTACTCGGGATGAGATTTGAGTCCTCGCAGGTGTTCTTCGGCTTCGGAAAAGTGTCTTGTTCGGTTTCTTTTGTGCAGCAGGAACATTGAAACGGTGTGAAATTGAAGGATTAAACCTAtccatcactctctcttctCGACTCcgaaaaacaaatgtgtttgtaGTGTCAGGTTCTGCCTCATGTACTGTGTACTGTAAGTACGTTCTGGATGATTATTGTGCAAGtcgtttttttatgttttgttttgttttgttttttttctacctgAGACCAGCCAAGCTGTTGCAGATGTGAGGCGCCTCGGAACTGAAACATTGTTAATACACAAAATGTCCATTCTGTCTTACAGCTTCTCTCATTTTCACTTGTGAACAACAGAAATGAAAACGTGATTTGAAACTATGCTTTGAAATATTCTTCATATACACCATAATTGAGATATGGACTTATTTTGTACAGtcgtaaagtaaataaaaaaaaatgcacagct

Function

symbol description
cdh7 Predicted to enable cadherin binding activity and calcium ion binding activity. Predicted to be involved in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules; cell morphogenesis; and cell-cell junction organization. Predicted to be located in plasma membrane. Predicted to be part of catenin complex. Predicted to be active in adherens junction.

NR:

description
PREDICTED: cadherin-7

GO:

id name namespace
GO:0060034 notochord cell differentiation biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06799 CDH7; cadherin 7, type 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941430.2 True 4370 mRNA 0.53 13 2422004 2510072

Neighbor

gene id symbol gene type direction distance location
tesk2 tesk2 coding downstream 117604 2275585 ~ 2304400 (-)
si:ch73-382f3.1 si:ch73-382f3.1,LOC108280542,LOC103028992,LOC108432269,LOC107602516,LOC107674450 coding downstream 153808 2264673 ~ 2268196 (-)
selenop2 LOC108280874 coding downstream 159410 2259143 ~ 2262594 (-)
zswim5 zswim5,LOC107728925,LOC107602525,LOC107584626,LOC107714849,LOC107674240,LOC107679324 coding downstream 198403 2184830 ~ 2223601 (-)
tmem68 tmem68,LOC103025502,LOC107674304,LOC107584594,LOC107714846,LOC107602519 coding downstream 288718 2126846 ~ 2133286 (-)
impa1 impa1,LOC103041306,LOC108435499,LOC105900623,LOC107674158,LOC107602533,LOC107688552,LOC107729422 coding upstream 151955 2662027 ~ 2667316 (-)
mplkip mplkip coding upstream 218165 2728237 ~ 2731252 (-)
inhbab inhba coding upstream 269767 2779839 ~ 2789522 (-)
afg3l2 afg3l2,LOC107589831,LOC108435493,LOC107689395,LOC107688430,LOC107585478 coding upstream 283786 2793858 ~ 2806513 (-)
ctdsplb ctdsplb,LOC108280637,LOC108435491,LOC107722544,LOC107589830,LOC107585460,LOC107688434 coding upstream 327024 2837096 ~ 2857358 (-)
G313339 NA non-coding downstream 737 2421068 ~ 2421267 (-)
LOC117599961 NA non-coding downstream 163755 2252897 ~ 2258249 (-)
LOC117599960 NA non-coding downstream 169398 2248660 ~ 2252606 (-)
LOC113543303 NA non-coding downstream 241349 2176465 ~ 2180655 (-)
G313198 NA non-coding downstream 295624 2125894 ~ 2126380 (-)
G313637 NA non-coding upstream 202920 2712992 ~ 2713382 (-)
G313647 NA non-coding upstream 224904 2734976 ~ 2735177 (-)
G313655 NA non-coding upstream 230310 2740382 ~ 2740586 (-)
LOC117599940 NA non-coding upstream 233471 2743543 ~ 2746079 (-)
G313704 NA non-coding upstream 324421 2834493 ~ 2928703 (-)
G313307 dsel,LOC108432253 other downstream 97438 2319769 ~ 2324566 (-)
dlgap1a dlgap1,dlgap1a,LOC107584464,LOC107751362 other downstream 1076427 1272541 ~ 1345577 (-)
rbm33b NA other downstream 1370405 1005251 ~ 1051599 (-)
fbxl7 fbxl7,LOC108280577,LOC107718179,LOC107689422,LOC107688519 other upstream 159146 2669218 ~ 2712165 (-)
zbtb47a zbtb47b,znf652,LOC108280763 other upstream 368412 2878484 ~ 2888670 (-)
G313817 sall3,LOC108435487 other upstream 803232 3313304 ~ 3315092 (-)
fbxl4 fbxl4 other upstream 2290408 4800480 ~ 4817171 (-)
LOC113543250 znf236 other upstream 2452993 4963065 ~ 4996005 (-)

Expression


Co-expression Network