LOC113543404


Basic Information

Item Value
gene id LOC113543404
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 6470335 ~ 6470426 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404412.1
ATATTGCAGAAGTTAACATTCCCCTTGACAATGATGGAAGAGGTCTAATGGCTCTGCCACCTACTTCGTGGCATCTCTAACCATGTAtttgg

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404412.1 True 92 ncRNA 0.43 1 6470335 6470426

Neighbor

gene id symbol gene type direction distance location
LOC113542959 LOC108424002 coding downstream 41021 6422183 ~ 6429314 (-)
LOC113543279 LOC108280590,LOC108280591 coding downstream 52415 6406979 ~ 6417920 (-)
tgfb1a NA coding downstream 94022 6352403 ~ 6376313 (-)
LOC113543165 crgm2,LOC108260581,LOC108260582,LOC108260584,LOC108280748,LOC108260580,LOC108260664,LOC108260583,LOC108260578,LOC108280851 coding downstream 130406 6339049 ~ 6339929 (-)
LOC113543401 NA coding downstream 142559 6327668 ~ 6327776 (-)
bace1 bace1 coding upstream 6251 6476677 ~ 6491981 (-)
LOC113543365 LOC108280602,LOC108424004,LOC107720459,LOC107663737 coding upstream 23813 6494239 ~ 6499877 (-)
LOC117599935 NA coding upstream 30959 6501385 ~ 6503395 (-)
LOC113542979 LOC108280792 coding upstream 34530 6504956 ~ 6506756 (-)
LOC113542980 NA coding upstream 38753 6509179 ~ 6511038 (-)
G315606 NA non-coding downstream 204035 6265929 ~ 6266300 (-)
G315604 LOC108280887,LOC103033590,LOC108424028 non-coding downstream 205837 6263628 ~ 6264498 (-)
G315595 NA non-coding downstream 245722 6223355 ~ 6224613 (-)
G315393 NA non-coding downstream 569627 5900110 ~ 5900708 (-)
G315381 NA non-coding downstream 747013 5722950 ~ 5723322 (-)
G315721 NA non-coding upstream 3906 6474332 ~ 6474532 (-)
G315861 NA non-coding upstream 252587 6723013 ~ 6723230 (-)
LOC113542958 NA non-coding upstream 398099 6868525 ~ 6870463 (-)
G315940 NA non-coding upstream 442058 6912484 ~ 6912806 (-)
G315942 NA non-coding upstream 466817 6937243 ~ 6939847 (-)
trnat-agu_16 NA other downstream 1248500 5221762 ~ 5221835 (-)
trnat-agu_15 NA other downstream 1249319 5220943 ~ 5221016 (-)
trnat-agu_14 NA other downstream 1249801 5220461 ~ 5220534 (-)
LOC113543250 znf236 other downstream 1474330 4963065 ~ 4996005 (-)
fbxl4 fbxl4 other downstream 1653164 4800480 ~ 4817171 (-)
limk1a limk1,LOC107663742 other upstream 122843 6593269 ~ 6649395 (-)
rps28 rps28 other upstream 1094655 7565081 ~ 7568134 (-)
vcpip1 vcpip1 other upstream 2006797 8477223 ~ 8488629 (-)
G317176 NA other upstream 2413223 8883649 ~ 8885709 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other upstream 2433398 8903824 ~ 8954110 (-)

Expression


Co-expression Network