LOC113543365 (LOC108280602,LOC108424004,LOC107720459,LOC107663737)


Basic Information

Item Value
gene id LOC113543365
gene name LOC108280602,LOC108424004,LOC107720459,LOC107663737
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 6494239 ~ 6499877 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941488.2
CTGGTTCGGTGCCACATACAGGCTCCCTCGTTCTGAAGCAAATTCTAGCAATATCTGGATTTTATTGGAAACACAAGAAGTTAACAGATCTCAGACTGAAGCCGTTTACAGAGAAGCCATGATGGACGTATCTAAACTCATGCAGACCTGTTCAATGGGCTCACCTTGCCTTCCAGAGGACACTGGCCCATGTGCCAAAGCCCCTCAGGTCGCAAGGATCAAAGTTCAGCTGGAAACATACAGgctttggcaacagtttgaccAGCTTGGCACTGAGATGATAGTTACAAAAGCTGGGAGGAGGATGTTTCCTACATTTCAAGTGCACATCACAGATATGGACCCTGACGCAGAGTACGTCCTCCTCATGGACTTCATTCCAGTGGATGACAAGAGATACAGGTATGCCTTCCATAGCTCTTCATGGCTCATGGCAGGACGTGGAGATGTTGCAATCCCAGGAAGAGTGCACTTTCACCCAGATTCGCCAGCACGTGGGGCCCAGTGGATGAAACAAACAGTCTCATTTGACCGACTCAAACTTACCAACAACCTTCTGGATGATAACGGCCATATCATCCTGAACTCCATGCACCGCTATCAGCCACGGCTGCATGTAGTCCTCGTGGACCAAAGTAGGGACAGTCAGCGCTCAGTTCACCGCAACTTCTGCACATTCTCCTTCCCAGAAACACGATTCATTGCAGTCACCGCCTACCAGAACCACAGGATCACACAGCTGAAGATAGCCAGTAATCCTTTTGCTAAAGGCTTCCGCACTACAGACGCTAATAACTGGTCTGCAGAAGGGACCAAGTCTCACCTCTCTCATTCCCTTTTGCCCTTGCACCCTCAAGAAAGTGCACCACACCCAGGAACTTCTCGTAAGGAGCAGAGGacaacagaaaaacagcatGTAATCCAGGGAGCAGCCAGTACCactgagaggaagaagagggGGAGACACGCTCATGTCCACACTTCTCCTGTCCTCCCTCTGTTTCACTGTCAGTGGGACGATCTTCGGAGACCAGAAAGAAGCCACCTTGACTGAAGAAaagtcagtgtgtttatgttAAACTGATGTTATACTGTTTTCTTGTAATCTCCTAATAGTGCATGATGCGTCTAATGAGAAGTGTTTGCCTGTGTAACTCTATAAACTCTCCATCGCTTTCATGATTGTCTCTCACAGTGACTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941488.2 True 1202 mRNA 0.48 8 6494239 6499877

Neighbor

gene id symbol gene type direction distance location
bace1 bace1 coding downstream 2258 6476677 ~ 6491981 (-)
LOC113543404 NA coding downstream 23813 6470335 ~ 6470426 (-)
LOC113542959 LOC108424002 coding downstream 64925 6422183 ~ 6429314 (-)
LOC113543279 LOC108280590,LOC108280591 coding downstream 76319 6406979 ~ 6417920 (-)
tgfb1a NA coding downstream 117926 6352403 ~ 6376313 (-)
LOC117599935 NA coding upstream 1508 6501385 ~ 6503395 (-)
LOC113542979 LOC108280792 coding upstream 5079 6504956 ~ 6506756 (-)
LOC113542980 NA coding upstream 9302 6509179 ~ 6511038 (-)
LOC117599951 LOC108280792 coding upstream 12621 6512498 ~ 6514297 (-)
sept4b LOC108280779,LOC105901369,LOC108424102,LOC106612835,LOC106581048,LOC103378127 coding upstream 25384 6525261 ~ 6590417 (-)
G315721 NA non-coding downstream 19707 6474332 ~ 6474532 (-)
G315606 NA non-coding downstream 227939 6265929 ~ 6266300 (-)
G315604 LOC108280887,LOC103033590,LOC108424028 non-coding downstream 229741 6263628 ~ 6264498 (-)
G315595 NA non-coding downstream 269626 6223355 ~ 6224613 (-)
G315393 NA non-coding downstream 593531 5900110 ~ 5900708 (-)
G315861 NA non-coding upstream 223136 6723013 ~ 6723230 (-)
LOC113542958 NA non-coding upstream 368648 6868525 ~ 6870463 (-)
G315940 NA non-coding upstream 412607 6912484 ~ 6912806 (-)
G315942 NA non-coding upstream 437366 6937243 ~ 6939847 (-)
G315944 hnrnpl,LOC107567577 non-coding upstream 448381 6948258 ~ 6956141 (-)
trnat-agu_16 NA other downstream 1272404 5221762 ~ 5221835 (-)
trnat-agu_15 NA other downstream 1273223 5220943 ~ 5221016 (-)
trnat-agu_14 NA other downstream 1273705 5220461 ~ 5220534 (-)
LOC113543250 znf236 other downstream 1498234 4963065 ~ 4996005 (-)
fbxl4 fbxl4 other downstream 1677068 4800480 ~ 4817171 (-)
limk1a limk1,LOC107663742 other upstream 93392 6593269 ~ 6649395 (-)
rps28 rps28 other upstream 1065204 7565081 ~ 7568134 (-)
vcpip1 vcpip1 other upstream 1977346 8477223 ~ 8488629 (-)
G317176 NA other upstream 2383772 8883649 ~ 8885709 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other upstream 2403947 8903824 ~ 8954110 (-)

Expression


Co-expression Network