LOC113543165 (crgm2,LOC108260581,LOC108260582,LOC108260584,LOC108280748,LOC108260580,LOC108260664,LOC108260583,LOC108260578,LOC108280851)


Basic Information

Item Value
gene id LOC113543165
gene name crgm2,LOC108260581,LOC108260582,LOC108260584,LOC108280748,LOC108260580,LOC108260664,LOC108260583,LOC108260578,LOC108280851
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 6339049 ~ 6339929 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941230.2
GCTCACCAGTCGGAAACGACTTTGACAATCGAAGCATCGGTTTAGAACCCACATCGAAATCATGGGCAGGGTCATCTTCTACGAGGACAGGAACTTCATGGGCCGCTCCTATGAGTGCAGCAGTGACTGTTCCGATATATTCTCCTACCTGAGCCGCTGCCACTCCTGCAGGGTGGAGAGCGGCTGCTGGATGGTGTATGATCGCCCCAACTTCATGGGAAACCAGTACTTCATCAGGAGGGGCGAGTACCCCGACTACATGAACATGTGGGGCTGGGGCAACAACTGCATCAGGTCCTGCCGCATGATCCCCATGTACAGGGGCCCCTACAGAATGAGGATCTATGAGAGGGACAACTTCATGGGTCAGATGATGGAGCTAAGCGACGACTGCGACTCCGTCATGGATCGCTACCACTGGTCCAGTGGATGCCACTCGTGCCACGTGATGGATGGCCACTGGCTCATGTATGAGCATCCCCACTACAGAGGCAGGATGTGGTACTTCAGGCCCGGAGAGTACCGCAGCTTCAGGGACTACGGCAACATGAACTTCATGAGCGTGAGGCGCATCATGGATTCCTGGTATTGAAAACCTCTAACATGAAAAGCAAACAATCATTTGAATAAACCCTCCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941230.2 True 640 mRNA 0.53 3 6339049 6339929

Neighbor

gene id symbol gene type direction distance location
LOC113543401 NA coding downstream 11273 6327668 ~ 6327776 (-)
ppp5c ppp5c,LOC107703978,LOC107680091 coding downstream 16672 6310134 ~ 6322377 (-)
si:ch211-235m3.5 LOC108280736 coding downstream 32964 6285843 ~ 6306085 (-)
LOC113543299 LOC108280904,LOC108424092,LOC107680073,LOC107551266,LOC107749066,LOC107703962,LOC107598569 coding downstream 86396 6251447 ~ 6252653 (-)
LOC113543140 LOC108280693 coding downstream 94943 6243288 ~ 6244106 (-)
tgfb1a NA coding upstream 12474 6352403 ~ 6376313 (-)
LOC113543279 LOC108280590,LOC108280591 coding upstream 67050 6406979 ~ 6417920 (-)
LOC113542959 LOC108424002 coding upstream 82254 6422183 ~ 6429314 (-)
LOC113543404 NA coding upstream 130406 6470335 ~ 6470426 (-)
bace1 bace1 coding upstream 136748 6476677 ~ 6491981 (-)
G315606 NA non-coding downstream 72749 6265929 ~ 6266300 (-)
G315604 LOC108280887,LOC103033590,LOC108424028 non-coding downstream 74551 6263628 ~ 6264498 (-)
G315595 NA non-coding downstream 114436 6223355 ~ 6224613 (-)
G315393 NA non-coding downstream 438341 5900110 ~ 5900708 (-)
G315381 NA non-coding downstream 615727 5722950 ~ 5723322 (-)
G315721 NA non-coding upstream 134403 6474332 ~ 6474532 (-)
G315861 NA non-coding upstream 383084 6723013 ~ 6723230 (-)
LOC113542958 NA non-coding upstream 528596 6868525 ~ 6870463 (-)
G315940 NA non-coding upstream 572555 6912484 ~ 6912806 (-)
G315942 NA non-coding upstream 597314 6937243 ~ 6939847 (-)
trnat-agu_16 NA other downstream 1117214 5221762 ~ 5221835 (-)
trnat-agu_15 NA other downstream 1118033 5220943 ~ 5221016 (-)
trnat-agu_14 NA other downstream 1118515 5220461 ~ 5220534 (-)
LOC113543250 znf236 other downstream 1343044 4963065 ~ 4996005 (-)
fbxl4 fbxl4 other downstream 1521878 4800480 ~ 4817171 (-)
limk1a limk1,LOC107663742 other upstream 253340 6593269 ~ 6649395 (-)
rps28 rps28 other upstream 1225152 7565081 ~ 7568134 (-)
vcpip1 vcpip1 other upstream 2137294 8477223 ~ 8488629 (-)
G317176 NA other upstream 2543720 8883649 ~ 8885709 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other upstream 2563895 8903824 ~ 8954110 (-)

Expression


Co-expression Network