AMCG00009314 (kpna4,LOC107750083)


Basic Information

Item Value
gene id AMCG00009314
gene name kpna4,LOC107750083
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 32928268 ~ 32939975 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009314
acaaaaattatatatatatatatatatatataaataaatatatatatatatttatttatttacagatatatattttccaacatGGCCGACAACGAGAAACTGGACAACCAGCGGCTGAagaatttcaaaaacaaggGTCGCGATTTGGAGtCTATGAGAAGACAGAGGAATGAGGTGGTCGTCGAGCTACGCAAGAATAAAAGAGATGAACACCTATTAAAACGACGAAATGTCCCTCATGAAGATATTTGCGAAGACTCTGATGTCGATGGGGACTACCGAGTGcaaaACACCTCTTTAGAAGCAATAGTACAAAATGCCTCCAGTGATAACCAAGGCATACAGTTAAGTGCAGTGCAGGCAGCAAGAAAGCTGTTGTCAAGTGACCGTAACCCACCGATTGATGATTTGATCAAGTCTGGCATTTTACCTATTCTTGTCCACTGTCTTGAAAGGGATGACAAccCTTCATTACAATTTGAAGCTGCCTGGGCTTTAACTAACATCGCCTCTGGAACGTCTGAGCAGACGCAAGCTGTTGTCCAGTCAAATGCTGTTCCACTTTTCCTGCGATTATTGCAGTCTCCACATCAAAATGTTTGCGAGCAGGCAGTGTGGGCCCTGGGAAACATCATCGGTGATGGACCCCAGTGCAGGGATTACGTGATCAGCCTGGGAGTTGTGAAACCACTGCTCTCCTTCATCAGCCCATCCATCCCCATAACCTTCCTTCGCAACGTCACCTGGGTGATGGTCAACCTGTGTCGTCATAAGGATCCCCCCCCTCCGATGGAAACCATTCAGGAGCAGATCCTTCCAGCATTATGTGTCCTGATCCATCACACTGATGTCAATattCTGGTTGACACAGTGTGGGCTCTGTCCTATCTGACTGATGCTGGAAATGAGCAGATCCAGATGGTTATAGATTCAGGAATTGTTCCTCACCTGGTGCCTCTTCTCAGCCATCAAGAAGTTAAAGTGCAGACAGCGGCACTGAGAGCAGTGGGCAACATTGTGACCGGTACAGATGAGCAGACCCAGGCGGTTCTCAATTGTGATGCGCTCTCCCACTTCCCAGCCCTGCTGACCCATCCTAAAGAGAAGATCAATAAGGCAAGGATTTTTTTGGCTGCTGAGGCGGTGTGGTTCTTGTCAAACATAACTGCAGGGAACCAGCAGCAGGTCCAGGCTGTTATTGATGCCAACCTTGTGCCAATGATCATACATCTTTTGGACAAGGGAGATTTTGGTACTCAGAAGGAGGCCGCTTGGGCAATAAGTAATCTCACCATCAGTGGACGAAAAGACCAGGTGGCATACCTCATCCAACAGCAAGTGATTCCGCCGTTCTGCAACTTACTGACCGTGAAAGATGCACAGGTTGTTCAGGTGGTTTTAGATGGACTGAGTAATATCTTGAAAATGGCAGATGATGAGGCAGACACTATTGCAAACTTGATTGAGGAATGTGCAGGTTTGGAAAAAATTGAACAGTTACAGAATCATGAGAATGAGGACATCTATAAACTGGCCTATGAAATTATTGACCAGTTCTTCTCATCAGATGATattGATGAAGATTCAAGCCTGGTTCCAGAATCAATCCAGGGTGGGACTTATGGATTCAATTCATCAGCTAACGTGCCAGCAGAAGGGTTCCAGTTCTAAAAAGCTTCCCATTCTGGAGTTAATGTCATGATGCAGCACTGTAAAAAGAAATTTGATCCATTGTGCGCGGCTCATGGGATCCACTGCTGCATTTAAtcagagagaaaatgtgtgGATTTCGTTTGGCATCCAGGGAAAGCCCAAATGAAGTTGTGATGGCGAGTGGGTGCGAGTGAGAATGAGTGGCTAAATGTTGCAAAATCTACACCGAATGCTTTGAAGATGTTTCAGGTAACTGCAAGTTGTTGGAGGTCTTCGACAAAGAAGGATCAGagaaccaagaaaataaatttgaaCAATTGGACGAAAGAAGTACCATATCATAGCTTGTGGGCTTGTAGCTGACAAAGCAGGAAATTAGTCAACGTTTGTCAAAGTCCAGAGAGCCCGAACCAAGGCCTTGCTATGAAGCACTGTGTGAATGAACCCATGTGTGAATGTCTGGACTCAATGCCGTGGAGCCAGGTTCAACTCCTCAAATCCAGGGCTCTTCGTTCGCGAAAGCAGACTCCAAAGAGTCCAGGAGAGTGGCGTGTGTACGAGAGTATGGACGAAGTATGGGTGTGATGTATGTGAACGCATGCAAAACTTGATTTGCCTGTAAGAGGCTGATTTACTAAATCccagaaggaaggaaaaaaataaataacaccaaaaTTTTGCTTTAGTATTAAATTACACTGGACAACAAAATTGTCAGGTTGAGCAGCAGTGCATTGTAAGATATACATTCAGTAGTTTTTGGTTGACTCTTGCATCGTGTTTTCTTGACCTTTCCATCGctcacttgtttttttttaattatttttatttctaaactTTCTACAGCTTTATTTTAGATGCTTGTTAAAAACTACAACTTACAAGGCTCCCAGTCCCACCCCTACTTTTGCACCCGATATTGGTTTGACGCTGTGAATTTTTCCATATCATCACCTTtaacaaaccaaataaacttACTTGTGTAAGTTAGCTTCCTGCATGAATAAGTGTGAAATTTTTCCATGAAGCAAATCACTGCTTTGCAGTAGTGTTGCCATAACTCACTGCTTCAACTTTACATCACAAAAATATGATAAGATGGCCATTATATGTAACATTGTGTATCATTATAACCTTAGCATGTACTAAACTACAGCATAGATTTTTAGGTAAGTTTTGTTGGGctgtttacagtgtaattacttttttaggattctgtgctgtttaaatgttacatgtCTTTTCTGACttataattttcaattttcaaatatGGAAATTCCtaaaacaaattgcacatgtactGCTGAATAAGGACTGATTTGGAAAAAGGTGTTTAGATGTATAAATCAGTTGTTCCAACACCTTTAACAATATGCATAATCCTTTACTATAatctataatttttttttacttagacAGCCACGAACAATCCATTTTGAGCCACTTTAGGAGagtaaatctgaaaaataagaaaaaatgatGCAAagtctttacttttttttttaattatttttttaactattggAAAAACCTGCCTCTCATTTGAGGTCTTGTCAACAgagaaattgaaatgaaatctgTGCTCTTTAAGGTGGCTCACTGTAGGAAATGCTGTGCCTTCCCCCTTGAGCACAAGTGACGCATGAACAAGTTTGCTGTATTTAAGTACATCCAAGGTTAGCCACCATTAGCTTGTGTCGATTTTGTGTTGAGTAACTTCAAAACACTAGAATGGATTACATTTTGTGGTCATAACCTTTTCTTATACTAGGATACATTTTGCAGCATTCCTTGTCAGCAAAGATGTGGTTTCAAAAAATTAAGGAATAAGATAGTTTGCTTAACCTGTTAAATTAGACTGCAGGCTAGGTTgtctttaagaaaataaatattgaaaccCAGA

Function

symbol description
kpna4 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in NLS-bearing protein import into nucleus. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in cytoplasm. Predicted to be active in nucleoplasm. Orthologous to human KPNA4 (karyopherin subunit alpha 4).

NR:

description
importin subunit alpha-3

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K23583 KPNA3_4; importin subunit alpha-4/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009314 True 3558 mRNA 0.41 17 32928268 32939975

Neighbor

gene id symbol gene type direction distance location
AMCG00009316 ift80 coding downstream 24708 32895249 ~ 32903560 (-)
AMCG00009315 NA coding downstream 54994 32852198 ~ 32873274 (-)
AMCG00009310 NA coding downstream 97974 32808934 ~ 32830294 (-)
AMCG00009307 NA coding downstream 379806 32541621 ~ 32548462 (-)
AMCG00009302 shox2,LOC107703017 coding downstream 528561 32393705 ~ 32399707 (-)
AMCG00009321 ppm1l,LOC107722109,LOC107681725,LOC107560765 coding upstream 10641 32950616 ~ 32958237 (-)
AMCG00009322 ppm1l,LOC106580962,LOC101065476 coding upstream 61453 33001428 ~ 33004290 (-)
AMCG00009326 NA coding upstream 962160 33902135 ~ 33935311 (-)
AMCG00009328 NA coding upstream 1004274 33944249 ~ 33948166 (-)
AMCG00009325 NA coding upstream 1011172 33951147 ~ 33969816 (-)
G56185 NA non-coding downstream 83932 32844095 ~ 32844336 (-)
G56163 NA non-coding downstream 127373 32800535 ~ 32800895 (-)
G56012 NA non-coding downstream 896298 31998077 ~ 32031970 (-)
G55991 NA non-coding downstream 977595 31950422 ~ 31950673 (-)
G55975 NA non-coding downstream 1012895 31915168 ~ 31915373 (-)
G56256 sptssb non-coding upstream 93002 33032977 ~ 33038239 (-)
G56259 NA non-coding upstream 156022 33095997 ~ 33096230 (-)
G56260 NA non-coding upstream 156609 33096584 ~ 33096850 (-)
G56265 NA non-coding upstream 203881 33143856 ~ 33144122 (-)
G56401 NA non-coding upstream 1183631 34123606 ~ 34124979 (-)
AMCG00009275 NA other downstream 1743302 31150912 ~ 31184966 (-)
AMCG00009269 NA other downstream 1942273 30972953 ~ 30985995 (-)
G55881 NA other downstream 1981057 30944367 ~ 30947211 (-)
G55878 NA other downstream 1991017 30934564 ~ 30937251 (-)
AMCG00009265 NA other downstream 2270656 30599474 ~ 30657612 (-)
AMCG00009332 NA other upstream 1067628 34007603 ~ 34026160 (-)
AMCG00009333 NA other upstream 1102101 34042076 ~ 34050737 (-)
AMCG00009342 kcnab1 other upstream 1287299 34227274 ~ 34274084 (-)
G56438 kcnab1a,kcnab1,LOC107671078,LOC107675612,LOC107566585,LOC108263953 other upstream 1299509 34239484 ~ 34316008 (-)
AMCG00009347 gmps other upstream 1394286 34334261 ~ 34362341 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000092_04797021_04804488 KPNA4 coding CI01000092 null 4797021 ~ 4804539 (+)
striped catfish (Pangasianodon hypophthalmus) G315021 NA non-coding NC_047615.1 CM018561.1 5211957 ~ 5216588 (-)
mexican tetra (Astyanax mexicanus) G149934 NA non-coding NC_035913.1 CM008316.1 6741526 ~ 6745025 (+)