G56401


Basic Information

Item Value
gene id G56401
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 34123606 ~ 34124979 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU70508
tttatttcaaactaaAGCACAATAGAAGGTTTAATGCGATATCAcgtatattacatatacagtaaGGGAGTCCAACAGCAGATTCGTAACAAAACATGCGTATGAAGAAAGCAGGATGTATTTTAGCAAAACACTGCATGTGtcgtttaaaatgtagaaagcCTCTTCTCTCCTGCTGAATCATTGCAACTATAGACCTGCCAATAACTGCGATGGTGATGTCACTGAGTGAGGAGAGCAGAGGTGCACGGTGTGTCTGCTGTGCTTGTCTGTATTGTTCACGGGCTGCCCTGCGCGCTGCTGGGCGGTGAGGCCGGGCCTGTGGGCGCCCCGGGAAGCCCCTGTGACGTCGTTTCCAggaatgcttttttaaatcGCCCAACAGCTCCGTACATATCACTCCGCAGCAGGGCCTAGATGCGTGACGTCAGCGGCCTTTCCGCACGAAGGGCAGCATGGGAAACGCAGCCGAGCAGCGACTCCAGCGACAGACAAAGCGCGGCGTGTGAAGCGGGCAGAGCGCAGGACTGAACATGTCCTACCGCACAACAGAGCCTATTAGTTACTTGAACCTGTCCTTTTAGACTCTTGCCCAGGCagatatattacatttcaacCAAGACATGAACAGACagacaacattttttcattttgcaaagtATGTTgtatggttttgttgtttttgctgagCTATATAAGTTGGACCACACTTATCAGTATCATATTCCATGTCATATAAAATGTACCACCACATACAGTAGTTAGTTGACAAAGATGAAAGGTTACATGGAATAGAGGTTTAGTAATCCAATATACAAGAATAGTCCCCATCTTTTTATCAGATCAAGTTACCtgaccattttaaaacatttaaaatgtaagatacctaacaatttaaaaactgcattttacgtataaatgcacaaagaaaaaaagattcacCTTGTATGTTTGTTTCAGTAAATCAAAGCAGTAGGACATACATATATTCAGTAAATCAAAGCGATAGGagatatatacaccgatcagccataacattatgaccacctgcctaatattgtgtaggtcccccttttgccaccaaaacagccctgacctgtcgtggcatggactccactagacctctgaaggtgtgctgtggtatctggcaccaagacgttagcagcagatcctttaagtcctgtaagttgtgaggtgggtctccatggatcggacttgtttggccagcacatcccacagttgctcgattggattgagatctggggaatttggaggccgagtcaataccttgaactcgtgattcatcagaccaggtcaccttcttccactgctccatggtccagttctgatgctcacatgcccattgtaggcgct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70508 True 1374 lncRNA 0.45 1 34123606 34124979

Neighbor

gene id symbol gene type direction distance location
AMCG00009331 NA coding downstream 47512 34071836 ~ 34076094 (-)
AMCG00009327 NA coding downstream 146800 33970841 ~ 33976806 (-)
AMCG00009325 NA coding downstream 153790 33951147 ~ 33969816 (-)
AMCG00009328 NA coding downstream 175440 33944249 ~ 33948166 (-)
AMCG00009326 NA coding downstream 188295 33902135 ~ 33935311 (-)
AMCG00009339 NA coding upstream 15127 34140106 ~ 34169068 (-)
AMCG00009340 tiparp coding upstream 73236 34198215 ~ 34212174 (-)
AMCG00009341 NA coding upstream 95086 34220065 ~ 34221427 (-)
AMCG00009344 kcnab1a,LOC107711771,LOC107566585,LOC107675612,LOC107671078 coding upstream 151288 34276267 ~ 34278095 (-)
AMCG00009348 LOC103353156,LOC108264139,LOC105897118,LOC102202609,LOC102296764,LOC106520617,LOC101166072 coding upstream 185850 34310829 ~ 34333009 (-)
G56265 NA non-coding downstream 979484 33143856 ~ 33144122 (-)
G56260 NA non-coding downstream 1026756 33096584 ~ 33096850 (-)
G56259 NA non-coding downstream 1027376 33095997 ~ 33096230 (-)
G56256 sptssb non-coding downstream 1085367 33032977 ~ 33038239 (-)
G56185 NA non-coding downstream 1279270 32844095 ~ 32844336 (-)
G56513 NA non-coding upstream 1035612 35160591 ~ 35160877 (-)
G56515 LOC103376870 non-coding upstream 1047897 35172876 ~ 35173249 (-)
G56522 NA non-coding upstream 1223465 35348444 ~ 35348927 (-)
G56532 NA non-coding upstream 1233361 35358340 ~ 35358650 (-)
G56535 LOC108434093,LOC108264124,LOC103148094 non-coding upstream 1251107 35376086 ~ 35376369 (-)
AMCG00009333 NA other downstream 72869 34042076 ~ 34050737 (-)
AMCG00009332 NA other downstream 97446 34007603 ~ 34026160 (-)
AMCG00009275 NA other downstream 2938640 31150912 ~ 31184966 (-)
AMCG00009269 NA other downstream 3137611 30972953 ~ 30985995 (-)
G55881 NA other downstream 3176395 30944367 ~ 30947211 (-)
AMCG00009342 kcnab1 other upstream 102295 34227274 ~ 34274084 (-)
G56438 kcnab1a,kcnab1,LOC107671078,LOC107675612,LOC107566585,LOC108263953 other upstream 114505 34239484 ~ 34316008 (-)
AMCG00009347 gmps other upstream 209282 34334261 ~ 34362341 (-)
G56546 LOC103376870 other upstream 1413908 35538887 ~ 35539810 (-)
G56568 NA other upstream 1747144 35872123 ~ 35872597 (-)

Expression


Co-expression Network