RNA id: TU70508


Basic Information

Item Value
RNA id TU70508
length 1374
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G56401
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 34123606 ~ 34124979 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttatttcaaactaaAGCACAATAGAAGGTTTAATGCGATATCAcgtatattacatatacagtaaGGGAGTCCAACAGCAGATTCGTAACAAAACATGCGTATGAAGAAAGCAGGATGTATTTTAGCAAAACACTGCATGTGtcgtttaaaatgtagaaagcCTCTTCTCTCCTGCTGAATCATTGCAACTATAGACCTGCCAATAACTGCGATGGTGATGTCACTGAGTGAGGAGAGCAGAGGTGCACGGTGTGTCTGCTGTGCTTGTCTGTATTGTTCACGGGCTGCCCTGCGCGCTGCTGGGCGGTGAGGCCGGGCCTGTGGGCGCCCCGGGAAGCCCCTGTGACGTCGTTTCCAggaatgcttttttaaatcGCCCAACAGCTCCGTACATATCACTCCGCAGCAGGGCCTAGATGCGTGACGTCAGCGGCCTTTCCGCACGAAGGGCAGCATGGGAAACGCAGCCGAGCAGCGACTCCAGCGACAGACAAAGCGCGGCGTGTGAAGCGGGCAGAGCGCAGGACTGAACATGTCCTACCGCACAACAGAGCCTATTAGTTACTTGAACCTGTCCTTTTAGACTCTTGCCCAGGCagatatattacatttcaacCAAGACATGAACAGACagacaacattttttcattttgcaaagtATGTTgtatggttttgttgtttttgctgagCTATATAAGTTGGACCACACTTATCAGTATCATATTCCATGTCATATAAAATGTACCACCACATACAGTAGTTAGTTGACAAAGATGAAAGGTTACATGGAATAGAGGTTTAGTAATCCAATATACAAGAATAGTCCCCATCTTTTTATCAGATCAAGTTACCtgaccattttaaaacatttaaaatgtaagatacctaacaatttaaaaactgcattttacgtataaatgcacaaagaaaaaaagattcacCTTGTATGTTTGTTTCAGTAAATCAAAGCAGTAGGACATACATATATTCAGTAAATCAAAGCGATAGGagatatatacaccgatcagccataacattatgaccacctgcctaatattgtgtaggtcccccttttgccaccaaaacagccctgacctgtcgtggcatggactccactagacctctgaaggtgtgctgtggtatctggcaccaagacgttagcagcagatcctttaagtcctgtaagttgtgaggtgggtctccatggatcggacttgtttggccagcacatcccacagttgctcgattggattgagatctggggaatttggaggccgagtcaataccttgaactcgtgattcatcagaccaggtcaccttcttccactgctccatggtccagttctgatgctcacatgcccattgtaggcgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70494 lncRNA downstream 73446 34049187 ~ 34050160 (-) False AMCG00009333
TU70493 lncRNA downstream 114619 34007603 ~ 34008987 (-) False AMCG00009332
TU70330 lncRNA downstream 979484 33143856 ~ 33144122 (-) True G56265
TU70325 lncRNA downstream 1026756 33096584 ~ 33096850 (-) True G56260
TU70324 lncRNA downstream 1027376 33095997 ~ 33096230 (-) True G56259
TU70553 lncRNA upstream 114505 34239484 ~ 34316008 (-) False G56438
TU70554 lncRNA upstream 114505 34239484 ~ 34304911 (-) False G56438
TU70572 lncRNA upstream 232294 34357273 ~ 34359038 (-) False AMCG00009347
TU70644 lncRNA upstream 1035612 35160591 ~ 35160877 (-) True G56513
TU70646 lncRNA upstream 1047897 35172876 ~ 35173249 (-) True G56515
AMCG00009331 mRNA downstream 47512 34071836 ~ 34076094 (-) True AMCG00009331
AMCG00009333 mRNA downstream 72869 34042076 ~ 34050737 (-) True AMCG00009333
AMCG00009332 mRNA downstream 97446 34008021 ~ 34026160 (-) True AMCG00009332
AMCG00009327 mRNA downstream 146800 33970841 ~ 33976806 (-) True AMCG00009327
AMCG00009325 mRNA downstream 153790 33951147 ~ 33969816 (-) True AMCG00009325
AMCG00009339 mRNA upstream 15127 34140106 ~ 34169068 (-) True AMCG00009339
AMCG00009340 mRNA upstream 73236 34198215 ~ 34212174 (-) True AMCG00009340
AMCG00009341 mRNA upstream 95086 34220065 ~ 34221427 (-) True AMCG00009341
AMCG00009342 mRNA upstream 102317 34227296 ~ 34274084 (-) True AMCG00009342
AMCG00009344 mRNA upstream 151288 34276267 ~ 34278095 (-) True AMCG00009344
TU69876 other downstream 2938640 31165011 ~ 31184966 (-) True AMCG00009275
TU69861 other downstream 3137611 30972953 ~ 30985995 (-) True AMCG00009269
TU69860 other downstream 3176395 30944367 ~ 30947211 (-) True G55881
TU69850 other downstream 3186355 30934564 ~ 30937251 (-) True G55878
TU69693 other downstream 3465994 30602579 ~ 30657612 (-) False AMCG00009265
TU70548 other upstream 102295 34227274 ~ 34229389 (-) False AMCG00009342
TU70552 other upstream 114505 34239484 ~ 34279180 (-) True G56438
TU70685 other upstream 1413908 35538887 ~ 35539810 (-) False G56546
TU70686 other upstream 1413908 35538887 ~ 35539810 (-) True G56546
TU70688 other upstream 1413908 35538887 ~ 35539810 (-) False G56546

Expression Profile