RNA id: TU69861


Basic Information

Item Value
RNA id TU69861
length 2722
RNA type TUCP
GC content 0.37
exon number 5
gene id AMCG00009269
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30972953 ~ 30985995 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGATGCCGTGCACTCAATGGTTTTTACTGGATTCAAAAGCCATCTTTGTTAGCGGCAGCTGAAGAATCGGACTTAGTGCCCAGACTGCAGCTTCAAGCTATATCACATAGCGACAATGTCCACTTCAGGACAGTCCCAGGGGCCTCTGAATGCAGGGGTTAATCCAGAGTGTGTGGCCCCACCAGCGCAGCCCCCCAACACTACCAGCAACAAGCGCATCCAGCAGTCACAGGCCCAGGTGAAGGAGGTTGTGGATGTCATGAGGATGAACATGGAGAAGGTGATGGAGAGAGACACCAAGCTCTCAGAACTGGATGACCGTGCAGATGCCCTTCAGGCTGGTGCATCCCAATTTGAGACCAGTGCTGccaaactgaagagaaaaaattGGTGGAAAAACTGCAAGATGATGATTATACTGGGAGGAGTTTGTGCTGTCATTCTTATCATCATCATTGtttatttctgcaCCTAAAGAGCAGTGAAGATGATGGTATTGTGAGGCTTTGCTGTCTGGTAGTCCTTACCTTTCCTACAGTATCGTGACCTCAGCAGGAAGTGGTTGTGGCTGTTTGTTGTTCTGCTTCTAAATAATTGTAGAGAGTATGAGGGGGTCGCATGGTCACTGCTGCGGACCACTGTCTGTGACAACTACACCAGCTAAATACtgccaaatgtttatttttgtgtaagtATTTCACATTGTCTGCAACATGCCTGACAAGGAGGAGAATTATAAATGACATTTTgatgtaatgttgtttttttcactttatttgacattttcttgTGGGCGGCATAACAATCATCTCAATGGCCTTCAGAAATGCTTGCTTTATGGCATTTGCCAAATACATACAGTATCTACAATACTTCCCACAATCCAATCTCTTTGTGTTATGTTATTTGTAGATACAATTATGTCCTTTGACATTGATGATAATTGCACAGTGGCTGTTTTATGTGCATTTATGCCCCCTGTAACAGCCTGAGCCAAACTTGTCTCATTTAGCCCCACATATTTACAGTAACTACTaggaaagtaaaacaaaataacacattttaatagttaAATCTTTAACATctattatttaacattaaatagtTTTCATATGAATCATAATGTTTCACTTCCAACTCAGACTGACAAAAACCCATAGAACCGCATATTTAGATTTAACCAGGAAGCTAACATTACATTCAACACTGTGGAAAATCAAGGACAGTGTCTCTTGCATACCTTTCAGATACCTTCTCATCTAGATGTAAACACACTCAGTGCACATTTTATGTGTTATTTGGCAAATTGCCTTTGTGAATTTCTGgtccatttaaataatacattgatatatgaaaattaatagtttaatatacagtttttagaggggaaaaaaatgttttgtgcacactttattctgtacatttgttttgattcttGTTTTTGTACCAATATATTCACAAGTGCTTGTTGGTATTGTAATTTTACAAGTGTAATGTTTGCATACTAAGAATATTATGTGAATAGTTTTGCTGTTGGGAGTACAAAAGTGCTTATGTAAGagctaacatgcaaatgttttatatgcatACTTTGTGTGGTAAGTCAACACTGTGCCCTTATTACAAAACCAGTCTAATCATATTCTTATAGTGCCTGGACTGAACTCAAGAAGCTTAATTACAGCTTCAAATTAAGACTTTTCTAAGTCCAAGTTATTTATCCAGTGGTGTATACATGTTTACACTGCAAAATAGTGACAGTGCACAAAGGCAGGGATGGTTTTGAGCATTCTAAAGTAGCATTCTAACTTGTACAGCTTTTTTGATGGTATTTTCTGTCTGTGGTGAAGTTGTGCCTTAAGCATATTACTTTACTTGATGTATATTCCGGTATGTAAAATGTTACCTTATGCAAGCTTTCATACAACATTACGTGTAGTAGAGCTACCTTTTCACTGGGCTGTGTTTTAAGGTATTGGTGATCCTAAGTATTTTCTCTTTGTACCCTATTTTCTTGCTAGCCACAGAACGTTAATAACTCACCATGCTCTCTGCTTCTTTACTTTGTAATGAACTTTGTCTGGTTTGTAAGAGGTATGACATtcctttgtaaaataatatatgccaatatgtttttgaaatgtaatgcctatattacataattaatcTCTCAAGCTTTTACCTGTGCAAACCAATGATATTGTATAAGTGCCAAAGTTGGAGATCAGTTTAAGATCATTCCCAATTCCTTAATGTTCTGCCTGGGAATTGCATGGTTAAACTGTTTTTGATTAACAATTacgttttgcattttgcaactGTGATACTATTTATGATGGATATTTGGTATCATATTGTGTGCTTGACTTGATAAGTTGATGCGGTTAATTGGTATTGTACTCGTGTATTACATGTAAAAGCACACATGCATTTAGTTAAAAAcacgtgtgagtgtgtgtttattatatgtTCTTTAACTTCCCATGTTTTTAATCACCTGGACATGatcttcaaataaaaacaggtaTTGTGGTTGACCATCATGAATGAAAGATTGAGTgatatttgttaaattatatgtGTTTACCCATTTACCCATGAgtcttcaaattatttttagaaatcaaCATTCCATTAATTGATGAGACTAAACATGTTCTTCATATATAACATTGATATCTGCAGTACAACTAAACTACATTTAGCATGCTACCATTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69824 lncRNA downstream 156862 30809576 ~ 30816091 (-) True G55861
TU69697 lncRNA downstream 317932 30652912 ~ 30655021 (-) True G55760
TU69654 lncRNA downstream 480973 30491238 ~ 30491980 (-) True G55722
TU69634 lncRNA downstream 489580 30480779 ~ 30483373 (-) True G55703
TU69564 lncRNA downstream 736558 30236159 ~ 30236395 (-) True G55648
TU69967 lncRNA upstream 929173 31915168 ~ 31915373 (-) True G55975
TU69990 lncRNA upstream 964427 31950422 ~ 31950673 (-) True G55991
TU70018 lncRNA upstream 1012082 31998077 ~ 32031970 (-) True G56012
TU70199 lncRNA upstream 1814540 32800535 ~ 32800895 (-) True G56163
TU70223 lncRNA upstream 1858100 32844095 ~ 32844336 (-) True G56185
AMCG00009270 mRNA downstream 2095 30947298 ~ 30970858 (-) True AMCG00009270
AMCG00009263 mRNA downstream 55331 30906868 ~ 30917622 (-) True AMCG00009263
AMCG00009261 mRNA downstream 67189 30895975 ~ 30905764 (-) True AMCG00009261
AMCG00009267 mRNA downstream 169323 30801745 ~ 30803630 (-) True AMCG00009267
AMCG00009266 mRNA downstream 276358 30693699 ~ 30696595 (-) True AMCG00009266
AMCG00009271 mRNA upstream 1129 30987124 ~ 31019808 (-) True AMCG00009271
AMCG00009272 mRNA upstream 80535 31066530 ~ 31067024 (-) True AMCG00009272
AMCG00009274 mRNA upstream 150574 31136569 ~ 31148800 (-) True AMCG00009274
AMCG00009275 mRNA upstream 164917 31150912 ~ 31184964 (-) False AMCG00009275
AMCG00009280 mRNA upstream 487758 31473753 ~ 31477141 (-) True AMCG00009280
TU69860 other downstream 25742 30944367 ~ 30947211 (-) True G55881
TU69850 other downstream 35702 30934564 ~ 30937251 (-) True G55878
TU69693 other downstream 315341 30602579 ~ 30657612 (-) False AMCG00009265
TU69579 other downstream 718470 30249871 ~ 30254483 (-) True AMCG00009241
TU69394 other downstream 1302616 29660960 ~ 29670337 (-) True AMCG00009229
TU69876 other upstream 179016 31165011 ~ 31184966 (-) True AMCG00009275
TU70548 other upstream 3241279 34227274 ~ 34229389 (-) False AMCG00009342
TU70552 other upstream 3253489 34239484 ~ 34279180 (-) True G56438
TU70685 other upstream 4552892 35538887 ~ 35539810 (-) False G56546
TU70686 other upstream 4552892 35538887 ~ 35539810 (-) True G56546

Expression Profile