AMCG00009261 (itm2c,LOC102237697,LOC105920507,LOC104919396)


Basic Information

Item Value
gene id AMCG00009261
gene name itm2c,LOC102237697,LOC105920507,LOC104919396
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30895975 ~ 30905764 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009261
CGCCGAAGGCTGCGTTCTAAATTTGAACATTCCGGCATCATCACGCCTTCTGTCGGGTTCCGCGCTGTCGTTGTCTATGTGGAAGTGGACGACAGCTGGCCAAAGCTAAAGAAACAGTCTTACCCAAAACAACCAGCCGCAGAGAAGCCAGACATGGTGAAAATCAGTTTTCAACCATCTACTGGGCAGAAGCCCGAGAAGGACGAGAGCGATGGAGATAAAACCGAGATCCTTATACCTCGTCACTCGGATGAGGAGCTGGTTCTTCCCATCAGGCCCAAAAAGTCTTCTCTAAATGGCCTGTGCTGCCTAACCTTAGGGTTGGTCGTTTTTATGTCTGGATTGGTCTTGGCATCCATATATGTCTACAGGTACTACTTCATTGCTCAGATCCCCCAGGAGAATATGTTCCACTGCCGTGTGCTGTACGAGGACTCCGTGTACGCCCCCCTCAAGGGCCGtcaggagctggaggagaacGTGGGCATTTACATCGACGACAACTACGAGCAGATAAACGTTCCTGTGCCTCACTTTGGAGGGAGCGATCCTGCTGACATCATTCACGATTTCCACAGGGGGCTGACTGCTTACCATGACATTGCGCTGGACAAATGCTACGTTATTGAGCTGAACACCACCATCGTCATGCCCCCCCGGAACCTCTGGGAGCTGCTGATCAACGTCAAGAAGGGGACATACCTGCCGCAGACCTATATTATCCAAGAAGAGATGATCGTGACTGGGAGGGTCCATAACATGCGCCAGCTGGGGGCTTTCATTTACAGACTGTGCAATGGGAAAGAGACCTACAGGCTGAAGCGTAGGAGCACCAGGAGACGTATCGATAAACGTGAAGCCCATAACTGCCACCACATCCGTCACTTTGAGAACACTTTTGTGGTAGAAACTGTAATCTGCGATAAGGCCTAACATATATTTTGCTGGTCGTTCTCCCATTACAAAGCAACCTCTGATACTGTAGCCATctcctgtgtgttgtgttgactGCACTTTAACCTTGATAATGTATCTTTAATTTCAGGAGTGCATTtgcattccttttttgttttacttgtttgtttgtgtttctttttttttgtatgtttattaaaatgttctgtctCTTGCACTTTTTTGTAGTTACAATAGTTCGTTATTTATGGCATaagctttttttatatacttttttttaatcaaaacttaaTATTCTAAAATATACAGAAGTGAGTTCTTTTCTGAATTGTCATGAGTTAAGGGTTTCAGAACAGAGAAGGTTGATTTAGTCAAGTTCCAGTTCACTTTaatgttttgtctttgatttaaaCCCCTCAATGGAAATGTAGTGCACTTTTCAATACACTAATATTCTACATGCAGATGTGCACATTCAGCAATGGCATTTCAtaaacctgtttgtttttttgtttttttcccctg

Function

symbol description
itm2c Enables amyloid-beta binding activity. Involved in negative regulation of neuron projection development and neuron differentiation. Located in several cellular components, including Golgi apparatus; lysosome; and perinuclear region of cytoplasm.

NR:

description
integral membrane protein 2C-like

GO: NA

KEGG:

id description
K18265 ITM2C, BRI3; integral membrane protein 2C

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009261 True 1440 mRNA 0.44 7 30895975 30905764

Neighbor

gene id symbol gene type direction distance location
AMCG00009267 NA coding downstream 92345 30801745 ~ 30803630 (-)
AMCG00009266 NA coding downstream 199380 30693699 ~ 30696595 (-)
AMCG00009268 NA coding downstream 243847 30651647 ~ 30652128 (-)
AMCG00009262 eif2b5 coding downstream 328281 30561748 ~ 30567694 (-)
AMCG00009253 NA coding downstream 348154 30544153 ~ 30547821 (-)
AMCG00009263 cab39 coding upstream 1104 30906868 ~ 30917622 (-)
AMCG00009270 NA coding upstream 41534 30947298 ~ 30970858 (-)
AMCG00009271 pik3cb,LOC106581359,LOC106613172 coding upstream 81360 30987124 ~ 31019808 (-)
AMCG00009272 foxl2,LOC101448029,LOC100136214,LOC106613173 coding upstream 160766 31066530 ~ 31067024 (-)
AMCG00009274 copb2,LOC106599054,LOC105021140 coding upstream 230805 31136569 ~ 31148800 (-)
G55861 NA non-coding downstream 79884 30809576 ~ 30816091 (-)
G55760 NA non-coding downstream 240954 30652912 ~ 30655021 (-)
G55722 NA non-coding downstream 403995 30491238 ~ 30491980 (-)
G55703 NA non-coding downstream 412602 30480779 ~ 30483373 (-)
G55648 NA non-coding downstream 659580 30236159 ~ 30236395 (-)
G55975 NA non-coding upstream 1009404 31915168 ~ 31915373 (-)
G55991 NA non-coding upstream 1044658 31950422 ~ 31950673 (-)
G56012 NA non-coding upstream 1092313 31998077 ~ 32031970 (-)
G56163 NA non-coding upstream 1894771 32800535 ~ 32800895 (-)
G56185 NA non-coding upstream 1938331 32844095 ~ 32844336 (-)
AMCG00009265 NA other downstream 238363 30599474 ~ 30657612 (-)
AMCG00009241 NA other downstream 639476 30249871 ~ 30256499 (-)
AMCG00009235 NA other downstream 905165 29977937 ~ 29990810 (-)
AMCG00009229 ccd50,LOC106613514 other downstream 1191046 29660960 ~ 29704929 (-)
AMCG00009215 gpr17 other downstream 1832945 29057941 ~ 29063030 (-)
G55878 NA other upstream 28800 30934564 ~ 30937251 (-)
G55881 NA other upstream 38603 30944367 ~ 30947211 (-)
AMCG00009269 NA other upstream 67189 30972953 ~ 30985995 (-)
AMCG00009275 NA other upstream 245148 31150912 ~ 31184966 (-)
AMCG00009332 NA other upstream 3101839 34007603 ~ 34026160 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G310662 NA non-coding CI01000095 null 4320643 ~ 4329876 (+)