AMCG00009274 (copb2,LOC106599054,LOC105021140)


Basic Information

Item Value
gene id AMCG00009274
gene name copb2,LOC106599054,LOC105021140
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 31136569 ~ 31148800 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009274
GCGTGATCCGCCACAGGAAGCTCCACGTCAGTGAGTCCAGCGCATCTCCGCCGAGTCGACACCGAAGAGAGGGGGACCTGGTTGGGACCTGGCTAGTACCTTTACACACCTGCCCGGCACCGTGCAAACATGcctCTGAGACTAGATATTAAGCGGAAGCTGACGGCTCGGTCAGACCGGGTGAAGAGTGTGGACCTGCACCCCACAGAGCCATGGATGTTGGCCAGTCTGTACAATGGCAGCGTCTGTGTGTGGAACCATGAGACGCAGACTCTGGTGAAAACCTTTGAGGTGTGTGATTTGCCAGTGAGAGCCTCTAAATTTGTTGCCAGAAAGAACTGGGTCATCACGGGAGCAGATGACATGCAGATTCGGGTATTCAACTACAACACTCTGGAGAGGGTTCACATGTTTGAAGCACACTCGGATTATATCCGTTGCATAGCTGTCCATCCCACTCAACCATACATTCTCACCAGCAGTGATGACATGCTCATCAAGCTGTGGGACTGGGAGAAGAAGTGGTCCTGCAGCCAAGTGTTTGAAGGCCACACTCACTACGTCATGCAGATCGTCATCAATCCAAAAGACAACAATCAGTTTGCCAGTGCCTCGTTGGACAGAACGATTAAGGTGTGGCAGCTTGGTTCCTCTTCTCCAAACTTCACCCTTGAGGGCCACGAGAAAGGTGTGAACTGTATAGATTATTACAGCGGAGGAGACAAGCCGTACCTCATCTCTGGAGCTGACGATCGCTTGGTGAAAATCTGGGATTATCAGaaTAAAACCTGTGTGCAGACATTGGAAGGCCATGCTCAGAATGTGTCGTGTGTCAGTTTTCATCCTGAACTCCCCATTATCATTACAGGCTCAGAGGATgGCACTGTTCGTATCTGGCATTCGAGCACATACCGCCTGGAGAGCACCCTGAACTATGGCATGGAGAGAGTGTGGTGTGTGGCTAGCCTGCGAGGATCCAACAATGTGGCTCTGGGCTACGACGAAGGCAGCATTATCATCAAGCTGGGTCGAGAAGAGCCTGCCATGTCCATGGACACCAATGGGAAGATTATTTGGGCCAAGCACTCCGAGATCCAGCAGGCCAATCTGAAAGCCATGGGCGATGCTGAAATCAAGGATGGAGAGCGCCTGCCGCTAGCGGTGAAAGACATGGGGAGCTGTGAGATCTACCCCCAGACCATCCAACACAACCCCAACGGCAGaTTCGTGGTGGTCTGTGGAGATGGAGAGTACATCATTTATACAGCCATGGCACTGAGAAATAAGAGCTTTGGCTCTGCACAGGAGTTCGTCTGGGCCCATGATTCCTCAGAGTATGCAATCCGCGAGAGCAATAGCGTTGTCAAGATCTTCAAAAACTTCAAAGAAAAGAAGTCTTTCAAACCTGACTTTGGTGCTGAAGGTATTTATGGTGGGTTCCTGTTGGGAGTAAGGTCTGTTAATGGATTGGCGTTTTATGACTGGGAAAACACTGAGCTGATCCGTCGCATTGAAATTCAGCCAAAACATATTTTCTGGTCAGACTCCGGTGAATTGGTCTGCATTGCTACTGAAGAGTCATTTTTCATTCTAAAGTACCTGTCGGAAAAGGTGGCAGGTGCACAAGAGTCAAATGAGGGAGTCACAGAGGATGGCATTGAAGATGCCTTTGAGGTTCAAGGAGAAATACAAGAAATAGTCAAGACAGGGTTGTGGGTTGGCGACTGCTTCATTTACACCAGCTCAGTAAACAGACTCAATTACTTTGTTGGAGGAGAAATTGTTACAATCGCTCACCTGGACAGGACAATGTATCTTTTGGGTTACATCCCCAAGGATAACCGTTTATACCTTGGTGATAAGGAACTGAATATTGTGAGCTACTCCTTGCTTGTGTCTGTGTTGGAGTACCAGACTGCCGTCATGAGGAGGGATTTTGGAATGGCAGATAAGGTTCTACCCACCATTCCAAAAGAGCAGAGAACAAGAGTGGCACACTTCTTAGAAAAACAgggcTTCAAACAGCAAGCTCTGGCTGTGTCTTCTGATCCTGAGCATCGTTTTGAGCTGGCGCTTCAGCTGGCAGAGCTGAAGATCGCGTATCAGCTAGCAGTAGAGGCAGAGAAGTGGAAGCAGCTGGCTGAGCTTGCCATCAGTAAGTGCCAGTTTGGATTGGCTCAGGAATGCCTGCACCATGCACAGGATTATGGGGGACTCTTACTGTTGGCCACTGCCTCTGGTAATGCTACCATGGTGGACAAACTGGCAGAGGGGGCTGAGAAGGATGGCAAGAACAACGTTGCTTTCATGACTTACTTTTTACAGGGAAAactcGACCACTGCCTGGAGCTCTTAATTCGGACAGGACGCCTGCCTGAAGCTGCTTTCTTAGCTCGTACATACCTTCCAAGCCAGGTTTCCAGGGTTGTGAAATTATGGCGGGAGAGCCTTTCAAAAGTTAATCAGAAAGCTGCCGAGTCATTGGCGGATCCCACAGAATATGAAAACCTGTTTCCAGGACTGAAAGAGGCCTTTGTGGCCGAGCAGTTCCTAAAAGAGAACGCTCTCAGCCAGATGAGACCAGCTGCTGAATATCCCCTCGTCACACCAAATGAAGAGAGAAATGTACTTGAAGAAGCCAAAGGTTATCAACCCAAAGGAACAGTGGAATCGGAGACTATTGCAAGTGTGGAAGAGCCCGAGACGGAAAGTGTCCCAGGTCCCTCATTGCTGGTGGAGGCCTCTGCTCCCAAACCTGATCCAGCTCCAGAGATCAAAGATGAAAAGACTTTGCAGGAGCTAGAAGATGACTTGGATAACTTGGAACTGGATGACATTGACACAACAGATGTAAACCTGGATGATGATTTTCTAGATGACTAACCCTCATGAGGCATTACTATTTAAGAGACCAAACCCTttatacttttactttttcatttttttccatggaAATATCACGAAAAGTAGAATGTAGTCCCTCCAAGATTTAATTGCTGCAGTatacaaatgtttgtgtttattttgtactttatacAGGAACTCTAGCTATCAAAAGCTACTATTATGCACTCAGTGCTCAGttgaatatgatttaatatcaTTGTGGTGTATCAACTCTAGAAGACTAAACTTTCATTGtcatttgaatattaaaatacatctttacCA

Function

symbol description
copb2 Predicted to enable structural molecule activity. Acts upstream of or within notochord development and somite development. Predicted to be located in Golgi membrane and cytoplasmic vesicle. Predicted to be part of COPI vesicle coat. Is expressed in several structures, including axial mesoderm; cardiovascular system; digestive system; fin; and nervous system. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 19. Orthologous to human COPB2 (COPI coat complex subunit beta 2).

NR:

description
PREDICTED: coatomer subunit beta'

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030903 notochord development biological_process
GO:0030117 membrane coat cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K17302 COPB2, SEC27; coatomer subunit beta'

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009274 True 3171 mRNA 0.48 22 31136569 31148800

Neighbor

gene id symbol gene type direction distance location
AMCG00009272 foxl2,LOC101448029,LOC100136214,LOC106613173 coding downstream 69545 31066530 ~ 31067024 (-)
AMCG00009271 pik3cb,LOC106581359,LOC106613172 coding downstream 116761 30987124 ~ 31019808 (-)
AMCG00009270 NA coding downstream 165711 30947298 ~ 30970858 (-)
AMCG00009263 cab39 coding downstream 218947 30906868 ~ 30917622 (-)
AMCG00009261 itm2c,LOC102237697,LOC105920507,LOC104919396 coding downstream 230805 30895975 ~ 30905764 (-)
AMCG00009280 spsb4,spsb4a,LOC108267127,LOC103021520,LOC108440634,LOC107743001 coding upstream 324953 31473753 ~ 31477141 (-)
AMCG00009279 slc25a36,slc25a36a,LOC107706334,LOC107668959,LOC108440632,LOC107694658 coding upstream 393862 31542662 ~ 31563060 (-)
AMCG00009282 epha4,LOC108440631 coding upstream 637969 31786769 ~ 31809463 (-)
AMCG00009285 pax3 coding upstream 733829 31882629 ~ 31900424 (-)
AMCG00009286 pax3 coding upstream 757926 31906726 ~ 31909194 (-)
G55861 NA non-coding downstream 320478 30809576 ~ 30816091 (-)
G55760 NA non-coding downstream 481548 30652912 ~ 30655021 (-)
G55722 NA non-coding downstream 644589 30491238 ~ 30491980 (-)
G55703 NA non-coding downstream 653196 30480779 ~ 30483373 (-)
G55648 NA non-coding downstream 900174 30236159 ~ 30236395 (-)
G55975 NA non-coding upstream 766368 31915168 ~ 31915373 (-)
G55991 NA non-coding upstream 801622 31950422 ~ 31950673 (-)
G56012 NA non-coding upstream 849277 31998077 ~ 32031970 (-)
G56163 NA non-coding upstream 1651735 32800535 ~ 32800895 (-)
G56185 NA non-coding upstream 1695295 32844095 ~ 32844336 (-)
AMCG00009269 NA other downstream 150574 30972953 ~ 30985995 (-)
G55881 NA other downstream 189358 30944367 ~ 30947211 (-)
G55878 NA other downstream 199318 30934564 ~ 30937251 (-)
AMCG00009265 NA other downstream 478957 30599474 ~ 30657612 (-)
AMCG00009241 NA other downstream 880070 30249871 ~ 30256499 (-)
AMCG00009275 NA other upstream 2112 31150912 ~ 31184966 (-)
AMCG00009332 NA other upstream 2858803 34007603 ~ 34026160 (-)
AMCG00009333 NA other upstream 2893276 34042076 ~ 34050737 (-)
AMCG00009342 kcnab1 other upstream 3078474 34227274 ~ 34274084 (-)
G56438 kcnab1a,kcnab1,LOC107671078,LOC107675612,LOC107566585,LOC108263953 other upstream 3090684 34239484 ~ 34316008 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location