AMCG00009286 (pax3)


Basic Information

Item Value
gene id AMCG00009286
gene name pax3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 31906726 ~ 31909194 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009286
ATGACAGCAATAGCTGGGGCAGTGCCAAGGATGATGAGACCCACGCCAGGACAGAACTACCCGCGCAGCGGATTTCCACTTGAGGtttcTACCCCTTTAGGACAAGGGAGGGTAAACCAGCTGGGTGGAGTTTTCATTAACGGCAGACCTTTACCAAATCACATCAGACACAAAATAGTGGAAATGGCCCATCACGGCATCAGGCCCTGTGTCATCTCCCGCCAGCTCAGAGTCTCCCATGGGTGTGTGTCCAAAATCCTGTGCAGGTACCAGGAGACGGGCTCTATCAGACCTGGCGCTATTGGAGGAAGTAAGCCCAAGGTGACAACGCCAGATGTGGAAAAGAAAATTGAGGAATACAAGAGAGACAATCCTGGGATGTTTAGTTGGGAAATTCGAGATAAACTGCTGAAAGATGGCATTTGTGACCGTAATACAGTTCCCTCagtGAGTTCAATTAGTCGTATTATGCGGAGTAAATTCGGAGGCAAGGGCGAAGATGAAGATGACGATGACGAGATTGAAAGAAAAGAGTTTGAAGAAAACGAAAAGAAAGCGAAGCACAGCATCGACGGGATCCTGGGAGACAGA

Function

symbol description
pax3 Enables sequence-specific double-stranded DNA binding activity. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in nucleoplasm. Implicated in Waardenburg syndrome type 1; Waardenburg syndrome type 3; Waardenburg's syndrome; alveolar rhabdomyosarcoma; and craniofacial-deafness-hand syndrome.

NR:

description
PREDICTED: paired box protein Pax-3 isoform X2

GO:

id name namespace
GO:0048484 enteric nervous system development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001755 neural crest cell migration biological_process
GO:0050936 xanthophore differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009286 True 591 mRNA 0.49 4 31906726 31909194

Neighbor

gene id symbol gene type direction distance location
AMCG00009285 pax3 coding downstream 6302 31882629 ~ 31900424 (-)
AMCG00009282 epha4,LOC108440631 coding downstream 97263 31786769 ~ 31809463 (-)
AMCG00009279 slc25a36,slc25a36a,LOC107706334,LOC107668959,LOC108440632,LOC107694658 coding downstream 343666 31542662 ~ 31563060 (-)
AMCG00009280 spsb4,spsb4a,LOC108267127,LOC103021520,LOC108440634,LOC107743001 coding downstream 429585 31473753 ~ 31477141 (-)
AMCG00009274 copb2,LOC106599054,LOC105021140 coding downstream 757926 31136569 ~ 31148800 (-)
AMCG00009287 NA coding upstream 9968 31919162 ~ 31919851 (-)
AMCG00009290 LOC102211227 coding upstream 31612 31940806 ~ 31953635 (-)
AMCG00009297 LOC108280899,LOC108428267,LOC107679405,LOC107567705 coding upstream 144614 32053808 ~ 32060010 (-)
AMCG00009294 NA coding upstream 157649 32066843 ~ 32083265 (-)
AMCG00009295 NA coding upstream 176608 32085802 ~ 32092762 (-)
G55861 NA non-coding downstream 1090635 30809576 ~ 30816091 (-)
G55760 NA non-coding downstream 1251705 30652912 ~ 30655021 (-)
G55722 NA non-coding downstream 1414746 30491238 ~ 30491980 (-)
G55703 NA non-coding downstream 1423353 30480779 ~ 30483373 (-)
G55648 NA non-coding downstream 1670331 30236159 ~ 30236395 (-)
G55975 NA non-coding upstream 5974 31915168 ~ 31915373 (-)
G55991 NA non-coding upstream 41228 31950422 ~ 31950673 (-)
G56012 NA non-coding upstream 88883 31998077 ~ 32031970 (-)
G56163 NA non-coding upstream 891341 32800535 ~ 32800895 (-)
G56185 NA non-coding upstream 934901 32844095 ~ 32844336 (-)
AMCG00009275 NA other downstream 721760 31150912 ~ 31184966 (-)
AMCG00009269 NA other downstream 920731 30972953 ~ 30985995 (-)
G55881 NA other downstream 959515 30944367 ~ 30947211 (-)
G55878 NA other downstream 969475 30934564 ~ 30937251 (-)
AMCG00009265 NA other downstream 1249114 30599474 ~ 30657612 (-)
AMCG00009332 NA other upstream 2098409 34007603 ~ 34026160 (-)
AMCG00009333 NA other upstream 2132882 34042076 ~ 34050737 (-)
AMCG00009342 kcnab1 other upstream 2318080 34227274 ~ 34274084 (-)
G56438 kcnab1a,kcnab1,LOC107671078,LOC107675612,LOC107566585,LOC108263953 other upstream 2330290 34239484 ~ 34316008 (-)
AMCG00009347 gmps other upstream 2425067 34334261 ~ 34362341 (-)

Expression


Co-expression Network