RNA id: TU69850


Basic Information

Item Value
RNA id TU69850
length 2183
RNA type TUCP
GC content 0.41
exon number 4
gene id G55878
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30934564 ~ 30937251 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATACTTAGAGTTGCTCACAATCTATTCCTGgttaacacaaaaacacatacattatataaatatattacttgaCAGTGTATTTGAGGATTAGTGGCTATTGTTACAATTGATGGACATATTGCAAGTGTATACAATGTTTTGGTGTTCCGGTAGATTTATTGCAGTGTTGTCACAGGAAATTTGTTAAGAACCCTCGCTGGAGAGGataatatgtgtttattataatgcattttatttatttgttaacaagacaagatatatagatatatgttaGATACAAAGGTGGTACTTTGTGGGTGGAAAATAACATATCTTTAATTGATTGAACACAAGGTAGAATACATTCTAAAGTCTCATAACATGGACAGAAGGCATTACATTGAATGCATGATGCACGAATACAAGGTAGCCCAACTTTACAGACCGTACGTATTAGACAGTGATTATAACACACATGGAACATTGAAAATAGGCCAATCTTATGACACTGATCCAACACGGAACACttggttttatgtatttttaaatcaaaaaggcaaacatgaatacatattgtACACAAGACTAATGTGCTAACGGTCATTTCACGTGTGCGTATCATACACCTTTTTTCGTCCTAATAGAACCCTGCTACCAATAATTGAACATTTACATCTAATATTAAACTTTTCATTTATCCTCCCTTCACTGAAGGTAGAAGTACATGACtaactgattttattacaaaacacaaatgcatattcCTTTAAGGAATATGgagaaatcaaaatatacaacTAAAAACACATTCTCTATATACATAATTATCTTGGGAATATTGAGTTTTATAAAACGCTAATTTTAAGTTTGTGGACATCCGTAGTTAGTTGAAATACTTCACGCATTACCAGATAGctggtaattaaaacaaaataaaatgaaaagagctTTTCTGCGATGTCCATACGAAACAAAcagatatttacaaaacagaTACTCTCGACTCTAAGAGAAGAGGGTCTAAGACGACTGGGTGTCAGTGGCAGGCAGGCAGTCATTCCAGGAGCAGTGCCATACAGGATGcgtttgtgtagcgcagatttcctcAGTTCTGCGCAGAgatgcgctgctccaccaatgggatccgtggaattctgcagaactGCGCAAATCTGGGCTACAACAACGCGACCACAGATTttaggatttcattttttttcctcccatcACGGGTACACCATTCCGAGAACATCAGGTTACTCTTCGCGGACCTTGAAATACATAGTAGGTAGATTTTATTTCTTACAtaacattacttttaaaaaaagaaaattgtaggTATGGATAAGAGTTCTACCAAGGTCTCCACATCGATTTTGAATAGGTAGTTGTGGGCATATTCTGAACCCCAGAGTTTTCCACCGTTTCTGGTGAAATCTGACTCTGCTCGTTGTCAGTCTCGTCTAGATCAGAACAGATGTCCTCGCTTGAGGTCGTGGATGGGGCCGGAGAGAGGGCTGAAGAAGCCCCGGACAAACTCGTCCCCCCGGGGGAAGCCAGTGAGGGGCTCATCCCATCACTGTTAAGCCAAGTGCTGTTGTTGCTGGAAGAGTCCGACATTAAATCCACGAGCATATCCTGAAAATGGTCCTCATTCAAAGGCATAGATTCCAAAAGGTGGTTCAATAACTCCGCGGCCACTGTAGCATCAATCCCCGGGCAATTCGACACAAACATGTGGACTTCGTGCATGCACTGGATGTACCCCGCTGCAAACCTCTCGCTCGCCTCCCGGTTTATAGTGTCAGCCTCCATGGCTCGGTTCCGCAGGATATTTTCAACTCGCTTCACAGTCATCTCTAACACTTCAGCATTCTCCATTTTCGTCTGGAGATCCGAGTCTGCCAAGAGCCCTCTAAGCTCCTGCAAACTTTCATTGATGCGGGCACGTCTCTTCTTCTCAACCAGGGGTTTCCTTGCCTTTCGGTCTCCTTTAATCCCATAGTATTCCTCCTCATCCCTGCTAGATCCATTTTTACTGGCTCGAGATGAGGGGGCCATGTTGGTTCCAACCCAAGAATAGGAGAAAACGGTGTAATCCACAAGTACGGTACGATCCTTGAGAGGGGCAGCTGGCAGGCGGACGCAGTCCCAGAAATCAGTACTGTAGACGCAAACAAGCTGGGTTTTATTGTGTAACCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69824 lncRNA downstream 118473 30809576 ~ 30816091 (-) True G55861
TU69697 lncRNA downstream 279543 30652912 ~ 30655021 (-) True G55760
TU69654 lncRNA downstream 442584 30491238 ~ 30491980 (-) True G55722
TU69634 lncRNA downstream 451191 30480779 ~ 30483373 (-) True G55703
TU69564 lncRNA downstream 698169 30236159 ~ 30236395 (-) True G55648
TU69967 lncRNA upstream 977917 31915168 ~ 31915373 (-) True G55975
TU69990 lncRNA upstream 1013171 31950422 ~ 31950673 (-) True G55991
TU70018 lncRNA upstream 1060826 31998077 ~ 32031970 (-) True G56012
TU70199 lncRNA upstream 1863284 32800535 ~ 32800895 (-) True G56163
TU70223 lncRNA upstream 1906844 32844095 ~ 32844336 (-) True G56185
AMCG00009263 mRNA downstream 16942 30906868 ~ 30917622 (-) True AMCG00009263
AMCG00009261 mRNA downstream 28800 30895975 ~ 30905764 (-) True AMCG00009261
AMCG00009267 mRNA downstream 130934 30801745 ~ 30803630 (-) True AMCG00009267
AMCG00009266 mRNA downstream 237969 30693699 ~ 30696595 (-) True AMCG00009266
AMCG00009268 mRNA downstream 282436 30651647 ~ 30652128 (-) True AMCG00009268
AMCG00009270 mRNA upstream 10047 30947298 ~ 30970858 (-) True AMCG00009270
AMCG00009269 mRNA upstream 35871 30973122 ~ 30981907 (-) False AMCG00009269
AMCG00009271 mRNA upstream 49873 30987124 ~ 31019808 (-) True AMCG00009271
AMCG00009272 mRNA upstream 129279 31066530 ~ 31067024 (-) True AMCG00009272
AMCG00009274 mRNA upstream 199318 31136569 ~ 31148800 (-) True AMCG00009274
TU69693 other downstream 276952 30602579 ~ 30657612 (-) False AMCG00009265
TU69579 other downstream 680081 30249871 ~ 30254483 (-) True AMCG00009241
TU69394 other downstream 1264227 29660960 ~ 29670337 (-) True AMCG00009229
TU69243 other downstream 1871534 29058284 ~ 29063030 (-) False AMCG00009215
TU68783 other downstream 3316475 27613598 ~ 27618089 (-) True AMCG00009165
TU69860 other upstream 7116 30944367 ~ 30947211 (-) True G55881
TU69861 other upstream 35702 30972953 ~ 30985995 (-) True AMCG00009269
TU69876 other upstream 227760 31165011 ~ 31184966 (-) True AMCG00009275
TU70548 other upstream 3290023 34227274 ~ 34229389 (-) False AMCG00009342
TU70552 other upstream 3302233 34239484 ~ 34279180 (-) True G56438

Expression Profile