RNA id: AMCG00009340


Basic Information

Item Value
RNA id AMCG00009340
length 2433
RNA type mRNA
GC content 0.49
exon number 5
gene id AMCG00009340
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 34198215 ~ 34212174 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cgaCTCCATTCACAGGTTTTGAAGGTGCTCCCTCCGCGTTGAAGATGGAGAAAAGTTTGCATTTGCTCCAAACCCAACCAGAAACGCCTGCTAAAATCCCAGACGCATCCTCCGAGGGAATCGCGATGCGCCACGGAGAGTTCAGTGACCAGATAGGCCTGTCAGACAAAATCCCCCTTGTCaaaccttatttaaaaaagaaacacgcTCAGAGGAAGTTGGATGCAAAATGTCTCCGGGCTTTGGATCCCATCCTCACGACTTTATTAAACTCAGATGGCCTTGTGGGAGGCGACGGGGTGTTTGTCCCCAGGAACCCGTCGAGGAGCCAAAGAAATCTGTGCGAGGCCGTGGTGGAGAAGCAAGCGAGAATAAGCCAGCTCTGTCTGAAGGGCGGCGACGCGGTGTCGGGAGTGATAGCGGCCGCCGGAGACGGAGACCTAGCCGGAGAGAGTGAACAAAAGGCGGCGGTTATCCAGCCCCAGGCGGGCGATGCCGCGGTGCCCAGTGCCGCCGTCTCCCCGGGCCAAGGAGACAACAGGAATGCGATCTACACCTCCGAGCCCTTGGAGATCGCCGACAAAGACCTCCACCTGAAAAGCCGGATCTTTCAGGATAAAAGCGAAGAAGCTTCCTTGGATCTGGTGTTTGAACTTCTGACCCAGCTCCAGTATCACACGCACCAAGGGGACGGGGTATCGATCTGTGTGGATTTCCTGCAGGGGGTCTGTGTTTATGGCGGGGACTGTGCCCAGCACCACACGGTCCTGCCTTATCACTGGCAGATCAAAAGGGCCGATTCACAGATGTGGCAGAGTGTATCGGATGACTCCCAGGAACAATTGGAAAGGCTCTATTGCAATCCGGACAATGACCAAGTCAGACTTAAATATCAGGGACGTGTTTTCACTCTGGACTTCAGCCTTATGCGAGTGTGTGATGTGGAATTCGACCTGGTGAGAAGACTAGCTACTCCTTCAAGTACAACTGTGACCTCCAATTACCACATGGTGTGGAAATACTATTGCAGGGATAATTTTGGCTGGAGGGAATATTCCGAGCCTGTTGTCCGACTGATTGAAGAAGCTACCTGTCGGGGTTTAAAGGAAGTTCGCTTTGTCACACTGCAGAACCAGTACATCCTGAACATCCGAGAAGGGTTTCAGCAGAATGCCGTGTTTGGGTTCAgaagacaaatcaaaaaacGACCTCTTTTCCTCTCTTCAATCACGTTGATGCCTTACTTACAGACTCTTGGTGGCCTTTCTTCAGCAATATTTCCATCAATGGACCTAGTCCCCTCACAGCCCTTATCTCCAACAACATCTACCTCCCCAAAGGTCTATCCCGAAACTTGGCTTCCAATGGACTCTTTTCAGGACTTTGTCCAAGTGCCGGTATCCAAAGATGACAAGAGCTACAGGACTGTCTACAGCCTTTTTCACAAGACTGTTTCAGAAACCAAATTCAGGATTTTGAAGATCATGAGAGTTCAAAATCCATTCCTTTGGGAAAAGTATAAAAGGAAGAAGGAGTACATGTCCAGGAGGATGTCGGAGATGGATCGCATGCTGAACGAAAGGCACCTTTTCCACGGCACCTCCCACGACGTTGTGGAGGGCATCTGCAAGCACAACTTCGACCCGCGCGTCTGCGGAAAGCACGCCACCATGTTCGGACAGGGCAGCTACTTCGCCAGGAAAGCCATCTACTCGCACAACTTCTCCAAGCGCTCCCCCAAAGGGGTGCACTACATGTTCCTGGCCAAGGTCCTGACGGGGAAGTTCACAGTGGGCAACCCCACCATGAGGAGGCCACCACCTTTGAACTCCAGTGATGCCTCCAGTGACTTGTTTGACTCTTGCGTGGACAACTGGATAGACCCTCAGATCTTTGTGATTTTCAACGATGACCAGAGCTACCCCTATTTCATTATACAATATGAAGAAGTTTCAAGCACTGTCTCCATTTAGCTCCCTGTGCTGCCAATcgctgctgtactgtactgtactgaaaaaGACCGCGGACATGAACGAGAGGTACAGAAACAGTGTTGAAAGTTCGTGGCTCCTTTTCTAAAGGCATTTCGGTACCCCCTGCCAGACCCACTGCTATGTTCTGGGTTTTGGTGGAGGTAGAGACCTTGCAGCTCTTCAATGGTAGCACCCTCCCCATTTCTGAACACGGCCATACGAGTTCAACAATTCTGTTTCTAGCAACTACAGTTTTGGGGTGTAGACCTTCCaagtgtgtatatagttcatggACAACAATAGTGGCATGTCCAGAGTCCAGTGCTTTTGTGACTGTTGACTTTTTTTGGAGTCAGGATTTGTGAGAAATGTAcatatgttttcattgtttatattGGAACTGTGTGCCTTTTGTTCATAACAAATGTCTATTTATGTTagtaaacattattaaaaaaaa

Function

GO:

id name namespace
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0046872 metal ion binding molecular_function
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function

KEGG:

id description
K15259 PARP7S; poly [ADP-ribose] polymerase 7/11/12/13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70508 lncRNA downstream 73236 34123606 ~ 34124979 (-) True G56401
TU70494 lncRNA downstream 148055 34049187 ~ 34050160 (-) False AMCG00009333
TU70493 lncRNA downstream 189228 34007603 ~ 34008987 (-) False AMCG00009332
TU70330 lncRNA downstream 1054093 33143856 ~ 33144122 (-) True G56265
TU70325 lncRNA downstream 1101365 33096584 ~ 33096850 (-) True G56260
TU70553 lncRNA upstream 27310 34239484 ~ 34316008 (-) False G56438
TU70554 lncRNA upstream 27310 34239484 ~ 34304911 (-) False G56438
TU70572 lncRNA upstream 145099 34357273 ~ 34359038 (-) False AMCG00009347
TU70644 lncRNA upstream 948417 35160591 ~ 35160877 (-) True G56513
TU70646 lncRNA upstream 960702 35172876 ~ 35173249 (-) True G56515
AMCG00009339 mRNA downstream 29147 34140106 ~ 34169068 (-) True AMCG00009339
AMCG00009331 mRNA downstream 122121 34071836 ~ 34076094 (-) True AMCG00009331
AMCG00009333 mRNA downstream 147478 34042076 ~ 34050737 (-) True AMCG00009333
AMCG00009332 mRNA downstream 172055 34008021 ~ 34026160 (-) True AMCG00009332
AMCG00009327 mRNA downstream 221409 33970841 ~ 33976806 (-) True AMCG00009327
AMCG00009341 mRNA upstream 7891 34220065 ~ 34221427 (-) True AMCG00009341
AMCG00009342 mRNA upstream 15122 34227296 ~ 34274084 (-) True AMCG00009342
AMCG00009344 mRNA upstream 64093 34276267 ~ 34278095 (-) True AMCG00009344
AMCG00009348 mRNA upstream 98655 34310829 ~ 34333009 (-) True AMCG00009348
AMCG00009347 mRNA upstream 122087 34334261 ~ 34362341 (-) True AMCG00009347
TU69876 other downstream 3013249 31165011 ~ 31184966 (-) True AMCG00009275
TU69861 other downstream 3212220 30972953 ~ 30985995 (-) True AMCG00009269
TU69860 other downstream 3251004 30944367 ~ 30947211 (-) True G55881
TU69850 other downstream 3260964 30934564 ~ 30937251 (-) True G55878
TU69693 other downstream 3540603 30602579 ~ 30657612 (-) False AMCG00009265
TU70548 other upstream 15100 34227274 ~ 34229389 (-) False AMCG00009342
TU70552 other upstream 27310 34239484 ~ 34279180 (-) True G56438
TU70685 other upstream 1326713 35538887 ~ 35539810 (-) False G56546
TU70686 other upstream 1326713 35538887 ~ 35539810 (-) True G56546
TU70688 other upstream 1326713 35538887 ~ 35539810 (-) False G56546

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00025769 True 2452 mRNA 0.51 5 NC_007129.7 34601023 ~ 34642086 (+)