G319496


Basic Information

Item Value
gene id G319496
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13069299 ~ 13069522 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU378398
cttgattttggagtgtggctgtggggatttgcccattcagccacaagagcattagtggggtcaggtactgatgttgggtgaagaggactggggtgcagtcagtgttccagttcatcccaaaggtgttcagtggggttgaggtcagggctctctgCAGGACACTCgacttcttccactccaaccttggcaaaccatgtctttatggatcttgttttgtgcacaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU378398 True 224 lncRNA 0.51 1 13069299 13069522

Neighbor

gene id symbol gene type direction distance location
cdc34b ub2r1,cdc34b,LOC108280790,LOC108433104,LOC105020474 coding downstream 69312 12986262 ~ 12999987 (-)
kcnj9 kcnj9,LOC108280861,LOC108433105,LOC107698496,LOC107713649,LOC107600231,LOC107757805,LOC107599257 coding downstream 104518 12940528 ~ 12964781 (-)
svilb LOC108280625 coding downstream 163863 12844080 ~ 12905436 (-)
LOC113533473 LOC108280623,LOC108280423 coding downstream 229286 12834674 ~ 12840013 (-)
LOC113533584 LOC108280423,LOC108280624 coding downstream 236770 12820071 ~ 12832529 (-)
LOC113533516 NA coding upstream 92014 13161536 ~ 13165217 (-)
cactin cactin,LOC103479278,LOC103479458 coding upstream 215850 13285372 ~ 13294978 (-)
LOC113533154 pde4dip coding upstream 237255 13306777 ~ 13377178 (-)
LOC113533394 LOC108280525 coding upstream 316869 13386391 ~ 13388837 (-)
admp LOC108280256,LOC108439880,LOC107754609,LOC107687929,LOC107596296,LOC107696672,LOC105906921,LOC107750936 coding upstream 520047 13589569 ~ 13592666 (-)
G319474 NA non-coding downstream 39595 13029109 ~ 13029704 (-)
G319467 NA non-coding downstream 47419 12989301 ~ 13021880 (-)
G319429 NA non-coding downstream 212721 12811315 ~ 12856578 (-)
G319186 NA non-coding downstream 272365 12772649 ~ 12796934 (-)
G319178 NA non-coding downstream 290073 12754768 ~ 12779226 (-)
G319544 si:ch211-168n16.1,LOC108433102,LOC108280795,LOC107713651,LOC107600229,LOC107757803,LOC107662975 non-coding upstream 49266 13118788 ~ 13119111 (-)
G319557 NA non-coding upstream 66082 13135604 ~ 13135860 (-)
G319559 NA non-coding upstream 66863 13136385 ~ 13136589 (-)
G319568 NA non-coding upstream 74541 13144063 ~ 13144271 (-)
G319606 NA non-coding upstream 236007 13305529 ~ 13309043 (-)
LOC113533649 LOC108280860,LOC108433106 other downstream 141228 12908453 ~ 12928071 (-)
wu:fb63a08 LOC108280878 other downstream 1363422 11619876 ~ 11705877 (-)
ccl20a.3 LOC108261059 other downstream 2541020 10527282 ~ 10528279 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 4096024 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 4115189 8903824 ~ 8954110 (-)
ccl25a NA other upstream 542994 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 595659 13665181 ~ 13680110 (-)
theg NA other upstream 1662212 14731734 ~ 14745487 (-)
LOC113533479 LOC108280451 other upstream 2153256 15222778 ~ 15231580 (-)
LOC113533563 NA other upstream 2617560 15687082 ~ 15724356 (-)

Expression


Co-expression Network