si:ch211-162e15.3 (LOC108280563)


Basic Information

Item Value
gene id si:ch211-162e15.3
gene name LOC108280563
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18225921 ~ 18227233 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU381774
GCTGAGAAGGACCTGATATGGTGTAACACCAAGCGCTAATCGAGCGCCGAATAGTCGATCAGGACCTTGACCACTTCATAGCGCCATCATGGTGTTACGGAGGCTCCTATACGCGTTAATAAACAACGCTCAGCTGGTGGAGAGGCTAGCCGAATCGCGGCCCATCCGGCGCGCGGCGCAGCTCACCGCCTTCGCCATCACGCGCGCGCAGATCGCCGGGAAGGACGCCGCGCGCCAGATCCGCGCAGGAGAGCTGGGTCAGAAAGGCGCGAGACTCCGGGACACTTTCCTCAGAGAGGTGAAGGAGGGGATGAGAGACGCGTCTCGACAAATTAAAGACAAGAAGTGAACGGTGTGGATTTAAAACTCGGGACAATCTGTGCGAACTGACTGAACACGGTGTCGGGCTTCCGGTGTTGTACATAATTATAAAAGTctgattgtgtgtttatttaataataacaacatatttaCACCTCAATACATCTGTCTCCTGTGACCTGAATTTCTTAAAGCTGTGTTTTCCAGCTGTAAGGGTGGTGGATCTCACTACAGCAGTGACATTGacatggttgt
>TU381775
GCTGAGAAGGACCTGATATGGTGTAACACCAAGCGCTAATCGAGCGCCGAATAGTCGATCAGGACCTTGACCACTTCATAGCGCCATCATGGTGTTACGGAGGCTCCTATACGCGTTAATAAACAACGCTCAGCTGGTGGAGAGGCTAGCCGAATCGCGGCCCATCCGGCGCGCGGCGCAGCTCACCGCCTTCGCCATCACGCGCGCGCAGATCGCCGGGAAGGACGCCGCGCGCCAGATCCGCGCAGGAGAGCTGGGTCAGAAAGGCGCGAGACTCCGGGACACTTTCCTCAGAGAGGTGAAGGAGGGGATGAGAGACGCGTCTCGACAAATTAAAGACAAGAAGTGAACGGTGTGGATTTAAAACTCGGGACAATCTGTGCGAACTGACTGAACACGGTGTCGGGCTTCCGGTGTTGTACATAATTATAAAAGTctgattgtgtgtttatttaataataacaacatatttaCACCTC
>XM_026946318.2
TTTAGGGGCTTTCATATCCGCCTGATTTAAAATCTCATCAACACTACGATTTGATTTCTAAACATTAAGTTAcgaataatattttgaaaatatttggtATTTTGGTTGAATGGAGTAAATGTACAATTGAGTGTATGATTTAACTAGATGCAATTTaagagtttaaaataaaagcaaatagaACAGAAAATATTTGTAACATAATTGTTGCTGTTGATGAAATTTTCTAGGAAGGCACAAAAGTTAAATTGCATGATCCAGAAGGGATGTTCGAGTGCTTAAATTTAGAAACCAGACCAATATACTAATAtagttagtttttattttattgttactCGTTATTTACTTCAGTGGTTCagatattatttataaactaCCATtagtatatttaatttttttctactttgGCTCTTAATTTATTCTTAAATTTATGTTAATCTGCATAAAACCATTTAGCATGCTATTATTAGGTAACTGTGTAAAATTAATTCACTGGTGTTCCGACGCTTTTTATAGTTACTAGTAATACATTCCTGGGATAAAACGCTACTCGGAATCAGGCACATTGATATCTACCTATATGAGGTCCTCCGATTCACGCGTCAAAACAATGCGACACGAGACCAATAGATACCGGAAGTGCTGAGAAGGACCTGATATGGTGTAACACCAAGCGCTAATCGAGCGCCGAATAGTCGATCAGGACCTTGACCACTTCATAGCGCCATCATGGTGTTACGGAGGCTCCTATACGCGTTAATAAACAACGCTCAGCTGGTGGAGAGGCTAGCCGAATCGCGGCCCATCCGGCGCGCGGCGCAGCTCACCGCCTTCGCCATCACGCGCGCGCAGATCGCCGGGAAGGACGCCGCGCGCCAGATCCGCGCAGGAGAGCTGGGTCAGAAAGGCGCGAGACTCCGGGACACTTTCCTCAGAGAGGTGAAGGAGGGGATGAGAGACGCGTCTCGACAAATTAAAGACAAGAAGTGAACGGTGTGGATTTAAAACTCGGGACAATCTGTGCGAACTGACTGAACACGGTGTCGGGCTTCCGGTGTTGTACATAATTATAAAAGTctgattgtgtgtttatttaataataacaacatatttaCACCTCAATA

Function

NR:

description
PREDICTED: uncharacterized protein DKFZp762I1415-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU381774 False 576 TUCP 0.52 2 18226562 18227233
TU381775 False 479 TUCP 0.54 2 18226562 18227136
XM_026946318.2 True 1124 mRNA 0.40 2 18225921 18227140

Neighbor

gene id symbol gene type direction distance location
bambib LOC108280666,LOC108430169 coding upstream 231243 17990725 ~ 17994678 (+)
wacb LOC108280665 coding upstream 246799 17965893 ~ 17979122 (+)
rab18b rab18,rab18b,LOC108430170,LOC107566717,LOC107708473,LOC107681801,LOC107691240,LOC107550439 coding upstream 353892 17860311 ~ 17872029 (+)
yme1l1b yme1l1,yme1l1b,LOC108430171,LOC107708459,LOC107566723,LOC107747521 coding upstream 372051 17842449 ~ 17853870 (+)
c1ql3b c1ql3b,LOC108280659,LOC107747511,LOC107566459,LOC107599856,LOC107691085,LOC107691073,LOC107681760,LOC107708591 coding upstream 708554 17514697 ~ 17517367 (+)
gnb4a gnb4,LOC108280743,LOC108440866,LOC103030165,LOC107705311,LOC107653516,LOC107564248,LOC105899196,LOC107724752 coding downstream 208116 18435349 ~ 18449078 (+)
si:ch1073-184j22.1 LOC108280744,LOC108440865,LOC107653514,LOC107564249,LOC107660327,LOC107705312 coding downstream 226903 18454136 ~ 18477637 (+)
sft2d3 sft2d3 coding downstream 261394 18488627 ~ 18489656 (+)
dusp28 dusp28 coding downstream 290695 18517928 ~ 18520990 (+)
LOC113546359 LOC108280706 coding downstream 316672 18543905 ~ 18546163 (+)
G322365 NA non-coding upstream 26212 18198840 ~ 18199709 (+)
G322324 NA non-coding upstream 151173 18074329 ~ 18074748 (+)
G322233 LOC108280496 non-coding upstream 370663 17854548 ~ 17855258 (+)
G322146 NA non-coding upstream 439220 17721938 ~ 17786701 (+)
G322127 NA non-coding upstream 594409 17631214 ~ 17631512 (+)
G322398 NA non-coding downstream 2162 18229395 ~ 18231463 (+)
G322405 NA non-coding downstream 111096 18338329 ~ 18343490 (+)
G322429 NA non-coding downstream 143494 18370727 ~ 18373883 (+)
G322446 NA non-coding downstream 205093 18432326 ~ 18432702 (+)
G322462 NA non-coding downstream 211934 18439167 ~ 18439866 (+)
npc1 npc1 other upstream 559708 17589072 ~ 17666213 (+)
egfra egfr,LOC107747514,LOC107691124 other upstream 589312 17570649 ~ 17636609 (+)
fuz fuz other upstream 742244 17478834 ~ 17483677 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other upstream 1366239 16838768 ~ 16859682 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other upstream 1432223 16791402 ~ 16793698 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other downstream 166790 18394023 ~ 18430022 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other downstream 588776 18816009 ~ 18871360 (+)
ssbp3a ssbp3,ssbp3a other downstream 717465 18944698 ~ 18985082 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other downstream 977425 19204658 ~ 19220229 (+)
LOC113546339 NA other downstream 1086627 19313860 ~ 19316206 (+)

Expression


Co-expression Network