capsla (LOC108280735,LOC108439882,LOC107552688)


Basic Information

Item Value
gene id capsla
gene name LOC108280735,LOC108439882,LOC107552688
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13658694 ~ 13661180 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925602.2
AGCTTCTCACTCAGACTACAGTAGGATCAGACAAGGGAGGTTGCTGCGTATAGCCAATCCACAGAGAAACAATTTGAATCAAAGTGTAGCTACTCTAATCTTCTGAGTGACACACTCGCTGGCAAGTGTCTAGTGTCTTTCATTTGGATCATTTGGAACAGGAGTCCAAACAAAGAAGCCTAGAAGAGAAAGAATGGCAGATACACTGGAGGAGTTGAGACAACAGTGTCTGAGTAGAGGAGCAGCTGGGATTAAAGGCCTGGCAAGGACCTTCCGCATCATGGATGACGATGGCAGTAAGTCTCTAAACCTGGAGGAGTTTCAGAAAGGTCTTGAGACCTATGGTTTGTGCGTTGAAAAGGAAAAGGTCATGGAGATCTTCACTTTAGTGGACAAAGATGGAAGCGGCACCATCGATTTCGATGAATTTCTTGAGAAACTAAGGCCCCCTATgtccagtgtcagaaagcagGTGATTAAACAGGCCTTCCAGAAGCTGGACCGTACCGGTGATGGAGTGGTAACTGTGCACGATTTACAGGGAGTCTACAACAGCAAACAACACCCCAAGTACAAGAGCGGCGAGTGGACCGAGGAACAAGTGTTCCGCTCTTTCCTCGACAGCTTCGACTCACCATATGAGAAAGATGGAAAGGTCACTCTGGACGAGTTTGTGAATTACTACAGTGGAGTCAGCGCCTCCATCGACAGCGATGATTACTTTGTCACCATGATGCAGAATGCATGGAAGCTGTAATCACCGCCGCTCTCATCTCTTCCGTGGAAGCCTACAAATTTGTAAACAGTTCACTTTACTAGAAATAGTGCTGATGACAGTAAATGATGTTTTTGGCTAAAACATTTCAGTTCCTGGAATTTTAAGTTGAAGTTGCttaaaaaaattgcatctgTGCAActgaattgtattttttttttttttttttttatgacta
>XM_026925603.2
AGCTTCTCACTCAGACTACAGTAGGATCAGACAAGGGAGGTTGCTGCGTATAGCCAATCCACAGAGAAACAATTTGAATCAAAGTGTAGCTACTCTAATCTTCTGAGTGACACACTCGCTGGCAAGTGTCTAGTGTCTTTCATTTGGATCATTTGGAACAGGAGTCCAAACAAAGAAGCCTAGAAGAGAAAGAATGGCAGATACACTGGAGGAGTTGAGACAACAGTGTCTGAGTAGAGGAGCAGCTGGGATTAAAGGCCTGGCAAGGACCTTCCGCATCATGGATGACGATGGCAGTAAGTCTCTAAACCTGGAGGAGTTTCAGAAAGGTCTTGAGACCTATGGTTTGTGCGTTGAAAAGGAAAAGGTCATGGAGATCTTCACTTTAGTGGACAAAGATGGAAGCGGCACCATCGATTTCGATGAATTTCTTGAGAAACTAAGGGGAGTCTACAACAGCAAACAACACCCCAAGTACAAGAGCGGCGAGTGGACCGAGGAACAAGTGTTCCGCTCTTTCCTCGACAGCTTCGACTCACCATATGAGAAAGATGGAAAGGTCACTCTGGACGAGTTTGTGAATTACTACAGTGGAGTCAGCGCCTCCATCGACAGCGATGATTACTTTGTCACCATGATGCAGAATGCATGGAAGCTGTAATCACCGCCGCTCTCATCTCTTCCGTGGAAGCCTACAAATTTGTAAACAGTTCACTTTACTAGAAATAGTGCTGATGACAGTAAATGATGTTTTTGGCTAAAACATTTCAGTTCCTGGAATTTTAAGTTGAAGTTGCttaaaaaaattgcatctgTGCAActgaattgtattttttttttttttttttttatgactaaACAATAAACCAAACCTG

Function

NR:

description
calcyphosin-like protein

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925602.2 True 953 mRNA 0.44 4 13658712 13661180
XM_026925603.2 False 875 mRNA 0.43 4 13658694 13661180

Neighbor

gene id symbol gene type direction distance location
im:7138239 LOC108280258,LOC108439873 coding downstream 59010 13594607 ~ 13599684 (-)
admp LOC108280256,LOC108439880,LOC107754609,LOC107687929,LOC107596296,LOC107696672,LOC105906921,LOC107750936 coding downstream 66028 13589569 ~ 13592666 (-)
LOC113533394 LOC108280525 coding downstream 269857 13386391 ~ 13388837 (-)
LOC113533154 pde4dip coding downstream 281516 13306777 ~ 13377178 (-)
cactin cactin,LOC103479278,LOC103479458 coding downstream 363716 13285372 ~ 13294978 (-)
abhd8a abhd8a,LOC108280232,LOC108439870,LOC107696148,LOC107754588,LOC107687901,LOC107596234,LOC103352801 coding upstream 32223 13693403 ~ 13703418 (-)
LOC113533381 LOC108280169,LOC108439884,LOC100333521,LOC107696163 coding upstream 44120 13705300 ~ 13710697 (-)
napgb napg,LOC107750913,LOC107696142,LOC105907026,LOC107687900 coding upstream 146595 13807775 ~ 13819461 (-)
acss2l LOC108280639,LOC108442433,LOC107750908 coding upstream 248685 13909865 ~ 13931138 (-)
LOC113533496 celf5,LOC108280171,LOC108444550,LOC107750904,LOC107696073,LOC107667861 coding upstream 481023 14142203 ~ 14336583 (-)
G319766 NA non-coding downstream 29237 13629247 ~ 13629457 (-)
G319754 NA non-coding downstream 71163 13587091 ~ 13587531 (-)
G319674 NA non-coding downstream 229731 13428011 ~ 13428963 (-)
G319673 LOC108280701,LOC108433090,LOC105903982,LOC106600049,LOC107384124,LOC105020399 non-coding downstream 232742 13422351 ~ 13425952 (-)
G319606 NA non-coding downstream 349651 13305529 ~ 13309043 (-)
G319906 NA non-coding upstream 170675 13831855 ~ 13834798 (-)
G319974 NA non-coding upstream 279431 13940611 ~ 13945349 (-)
G319975 NA non-coding upstream 287128 13948308 ~ 13949723 (-)
G319995 rnf126,LOC107750906,LOC107569633,LOC107596227,LOC107754583 non-coding upstream 348729 14009909 ~ 14010528 (-)
G319999 NA non-coding upstream 351022 14012202 ~ 14012408 (-)
ccl25a NA other downstream 42951 13612516 ~ 13615743 (-)
LOC113533649 LOC108280860,LOC108433106 other downstream 730623 12908453 ~ 12928071 (-)
wu:fb63a08 LOC108280878 other downstream 1952817 11619876 ~ 11705877 (-)
ccl20a.3 LOC108261059 other downstream 3130415 10527282 ~ 10528279 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 4685419 8969204 ~ 8973275 (-)
LOC113533556 LOC108280202 other upstream 4001 13665181 ~ 13680110 (-)
theg NA other upstream 1070554 14731734 ~ 14745487 (-)
LOC113533479 LOC108280451 other upstream 1561598 15222778 ~ 15231580 (-)
LOC113533563 NA other upstream 2025902 15687082 ~ 15724356 (-)
G321462 NA other upstream 2696394 16357574 ~ 16367004 (-)

Expression


Co-expression Network