cdh10a (cdh10a,LOC108280231,LOC107586427,LOC107667292,LOC107737811,LOC107567403,LOC107678940,LOC108432244,LOC107716359)


Basic Information

Item Value
gene id cdh10a
gene name cdh10a,LOC108280231,LOC107586427,LOC107667292,LOC107737811,LOC107567403,LOC107678940,LOC108432244,LOC107716359
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 1641101 ~ 1662293 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941479.2
AGGATCAATCGGAAACAGCCAAGCGATGAATCCCTTCTTCTGGCTGTTTGCACTGCTTTCCCTCCTCCCTCTGGTTTCGGCCATGAGGAGTCGGGGGATCGCTATCCGTGTTCAGCAGTCGGACGGACGAGTGCTGCACAGGTCCAAGCGTGACTGGATGTGGAGGCAGTTCTTCCTGTCGGAGGAATACACAGGAAGTAACTATCAGTATGTGGGCAAGCTTCGCTCGGATAAGGATAGAGGAGACGGCACAGCGCGCTACGTCCTCTCTGGAGAAGGAGCAGGCACCATTTTCCGCATCGATGAAAAGTCAGGTGATCTCCATGCCACTCAGAGACTCGACAGAGAAGAAAAagcatcctacaccctacaagCACAGGCCTTCAACAAATACACTGGCCTCCCTCTGGAACCGGCCACCGAGTTTATCGTCAAGATTCACGACATCAACGACAATGAGCCCAAGTTCACGCAGGCCGTCTACAGCGCCAGTGTCCCTGAGATGTCTGACGTCGGTACTTTTGTGATAGAAGTCAATGCCACGGACGCAGATGACGCCTCGTACGGGAACAGCGCTAAGCTCGTCTACAGCATACTACAAGGGCAGCCGTACTTCTCGGTGGAACCAGAGACAGGAATTGTGAGAATAGCACTATCCAACATGGACCGGGAGGTACGGAAGGACTACCAGGTGGTTATTCAGGCCAAAGACATGGCAGGACAGATGGGGGGTCTGTCTGGAACCACTGTGGTCAATGTGACCCTTACAGACGTTAATGACAGCCCGCCGCGCTTTGCCTACAGCTCCTACCATTTGAGCACTTATGAGTCGGCAGAAATTGGCTCCACGGTGGGTCGGATTAAAGCCAACGACGGGGACGAGGGACAGAACGCTGAGATGAAGTACAGGATTGTGGAAGGAGACGGGAAAGACTCGCTCGACATCATTACTGATGAGATAACGCAAGAAGGAATAATCGTTGTCAAAAAGAAACTGGATTATGAGAGCAGGCGTGTGTACACCATCAAAGTGGAagtgagtaacacacacacagaccccgGCTTCCTCCATCTGGGTCCGTTCTCAGACACGGCCATCGTCAAAGTGACGGCAAAGGACGTGGACGAGCCACCGGTGTTCAGCCGGCCGCATTTCATTATCGAGGTCAACGAGGACACGCCGAGGGGAAGCATCATCGGAACGGTTACAGCCTGGGATCCTGACGCAACCGACTACCCTGTGCAGTTTGCAATAGACGAGCACACAGATCCCGACAGACTCTTTCACATCGACCCCAGAAATGGCTCCATTACAACTCTGAAGTCTCTCGACAGAGAGGTGTCGAAGTGGCACAACATCTCCGTGCTCGCCAGCGAAATAAGTACGTTCACTCTCGGGAATAGAGCTAACATTTACATCACGAAtcttgatcttttttttcacaatccTGCTTCTTTCACCATCGTTTCAGATAATCCTCGTCAGAGAAGCCGTGTTCCCGTCTTGATCAAGGTGCTGGATGTGAACGATAACGCGCCCGAGTTCGCCATGTTTTACGAGACATTCGTGTGTGAGAATGTCAGAGCTGGGCAGCTAATCCAAACCATCAGTGCCATAGACACGGACGAGCCTCTCGTCGGACACAAGTTCGTCTTCAGTTTAAGTGCCAGCAATCCGAACTTTACCATCTTTGACAACGAAGATAACACGGCGAGGATCCTGACCAGGCGGAGTGGCTTTAACAGGCAGGAGATGAGCACGTACTACCTGCCCGTGGTGATCTCGGACAGCGATTATCCCATCCAGAGCAGCACGAGTACGCTGACCGTTCGCGTGTGCGGCTGTGACAGCACAGGGAACCTGCGCTCGTGCAGCGTGGACGCTCTGCTGCTCTCGGCACGGCTCAGCACCGCCGCCCTGGTGGCCATCCTGCTGTGCATCGTCATCCTGCTCATGATTGTGGTGCTGTTCTCGGCCCTGAGGAAGCAGCGACGCAAGGAGCCTCTAATCATCTCCAAAGAGGACGTCAGGGACAACGTGGTGAGCTACAACGACGAGGGTGGAGGCGAAGAGGACACGCAGGCCTTCGACATCGGAGCGCTGCGCCACCCGGAGGCCATGGAGGAAACCAACCAGCTGAGGCGTGACATCATCCCGGACGTCCTGTTCCCGTACCGCACGCGCTCGCCCGCCAACGAGTGCAGCGACCTCAGAGACTTCCTCATCAGCAGGCTGAAGGAGACGGACACCGACCCCTCTGCTCCTCCTTACGATTCCCTGGCGACGTACGCCTACGAGGGCAACGGCTCCATCGCCGAGTCTCTGAGCTCGCTGGAGTCATCAGTCAACGAAGGAGATCACGAGTACGACTTCCTCGGCACCTGGGGGCCGGAGTTTAAAAAGCTAGCCGACATGTACATGCCGAAAGAGCCGACATCGACTAGCTAAAGGATTCCACTCAGATTTGCGTGTGTATATCGCGGACTACGAGTTATCTCCCACTCCAGATGGATTTTCTACTGACACTCTGACACTGACTTTCACTTTTTTgctaaaaatctgattttttttgttcacggTCTCGTGGCAGTTTTTGTGCTGATGAGAAGAGTGTTTAGTGATTTTGTCGATGCTGTTTGTTcattagcagaaaaaaaaacgaaacaaaCATTTGACCTCAACTTCATTTGCTTGTGCGAAAGGTTTTACTCGCGTCATTTTGCCAAACTGTGGATATATCACTGAGATCAAATACAGCAGTGTTGTAGAAAtgctgcagaaacacacacaggcttgtttctgaatgttgtc
>XM_034314879.1
AGGATCAATCGGAAACAGCCAAGCGATGAATCCCTTCTTCTGGCTGTTTGCACTGCTTTCCCTCCTCCCTCTGGTTTCGGCCATGAGGAGTCGGGGGATCGCTATCCGTGTTCAGCAGTCGGACGGACGAGTGCTGCACAGGTCCAAGCGTGACTGGATGTGGAGGCAGTTCTTCCTGTCGGAGGAATACACAGGAAGTAACTATCAGTATGTGGGCAAGCTTCGCTCGGATAAGGATAGAGGAGACGGCACAGCGCGCTACGTCCTCTCTGGAGAAGGAGCAGGCACCATTTTCCGCATCGATGAAAAGTCAGGTGATCTCCATGCCACTCAGAGACTCGACAGAGAAGAAAAagcatcctacaccctacaagCACAGGCCTTCAACAAATACACTGGCCTCCCTCTGGAACCGGCCACCGAGTTTATCGTCAAGATTCACGACATCAACGACAATGAGCCCAAGTTCACGCAGGCCGTCTACAGCGCCAGTGTCCCTGAGATGTCTGACGTCGGTACTTTTGTGATAGAAGTCAATGCCACGGACGCAGATGACGCCTCGTACGGGAACAGCGCTAAGCTCGTCTACAGCATACTACAAGGGCAGCCGTACTTCTCGGTGGAACCAGAGACAGGAATTGTGAGAATAGCACTATCCAACATGGACCGGGAGGTACGGAAGGACTACCAGGTGGTTATTCAGGCCAAAGACATGGCAGGACAGATGGGGGGTCTGTCTGGAACCACTGTGGTCAATGTGACCCTTACAGACGTTAATGACAGCCCGCCGCGCTTTGCCTACAGCTCCTACCATTTGAGCACTTATGAGTCGGCAGAAATTGGCTCCACGGTGGGTCGGATTAAAGCCAACGACGGGGACGAGGGACAGAACGCTGAGATGAAGTACAGGATTGTGGAAGGAGACGGGAAAGACTCGCTCGACATCATTACTGATGAGATAACGCAAGAAGGAATAATCGTTGTCAAAAAGAAACTGGATTATGAGAGCAGGCGTGTGTACACCATCAAAGTGGAagtgagtaacacacacacagaccccgGCTTCCTCCATCTGGGTCCGTTCTCAGACACGGCCATCGTCAAAGTGACGGCAAAGGACGTGGACGAGCCACCGGTGTTCAGCCGGCCGCATTTCATTATCGAGGTCAACGAGGACACGCCGAGGGGAAGCATCATCGGAACGGTTACAGCCTGGGATCCTGACGCAACCGACTACCCTGTGCAGTTTGCAATAGACGAGCACACAGATCCCGACAGACTCTTTCACATCGACCCCAGAAATGGCTCCATTACAACTCTGAAGTCTCTCGACAGAGAGGTGTCGAAGTGGCACAACATCTCCGTGCTCGCCAGCGAAATAAATAATCCTCGTCAGAGAAGCCGTGTTCCCGTCTTGATCAAGGTGCTGGATGTGAACGATAACGCGCCCGAGTTCGCCATGTTTTACGAGACATTCGTGTGTGAGAATGTCAGAGCTGGGCAGCTAATCCAAACCATCAGTGCCATAGACACGGACGAGCCTCTCGTCGGACACAAGTTCGTCTTCAGTTTAAGTGCCAGCAATCCGAACTTTACCATCTTTGACAACGAAGATAACACGGCGAGGATCCTGACCAGGCGGAGTGGCTTTAACAGGCAGGAGATGAGCACGTACTACCTGCCCGTGGTGATCTCGGACAGCGATTATCCCATCCAGAGCAGCACGAGTACGCTGACCGTTCGCGTGTGCGGCTGTGACAGCACAGGGAACCTGCGCTCGTGCAGCGTGGACGCTCTGCTGCTCTCGGCACGGCTCAGCACCGCCGCCCTGGTGGCCATCCTGCTGTGCATCGTCATCCTGCTCATGATTGTGGTGCTGTTCTCGGCCCTGAGGAAGCAGCGACGCAAGGAGCCTCTAATCATCTCCAAAGAGGACGTCAGGGACAACGTGGTGAGCTACAACGACGAGGGTGGAGGCGAAGAGGACACGCAGGCCTTCGACATCGGAGCGCTGCGCCACCCGGAGGCCATGGAGGAAACCAACCAGCTGAGGCGTGACATCATCCCGGACGTCCTGTTCCCGTACCGCACGCGCTCGCCCGCCAACGAGTGCAGCGACCTCAGAGACTTCCTCATCAGCAGGCTGAAGGAGACGGACACCGACCCCTCTGCTCCTCCTTACGATTCCCTGGCGACGTACGCCTACGAGGGCAACGGCTCCATCGCCGAGTCTCTGAGCTCGCTGGAGTCATCAGTCAACGAAGGAGATCACGAGTACGACTTCCTCGGCACCTGGGGGCCGGAGTTTAAAAAGCTAGCCGACATGTACATGCCGAAAGAGCCGACATCGACTAGCTAAAGGATTCCACTCAGATTTGCGTGTGTATATCGCGGACTACGAGTTATCTCCCACTCCAGATGGATTTTCTACTGACACTCTGACACTGACTTTCACTTTTTTgctaaaaatctgattttttttgttcacggTCTCGTGGCAGTTTTTGTGCTGATGAGAAGAGTGTTTAGTGATTTTGTCGATGCTGTTTGTTcattagcagaaaaaaaaacgaaacaaaCATTTGACCTCAACTTCATTTGCTTGTGCGAAAGGTTTTACTCGCGTCATTTTGCCAAACTGTGGATATATCACTGAGATCAAATACAGCAGTGTTGTAGAAAtgctgcagaaacacacacaggcttgtttctgaatgttgtc

Function

symbol description
cdh10a Predicted to enable cadherin binding activity and calcium ion binding activity. Predicted to be involved in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules; cell morphogenesis; and cell-cell junction organization. Predicted to act upstream of or within cell adhesion. Predicted to be integral component of membrane. Predicted to be part of catenin complex. Predicted to be active in adherens junction. Is expressed in nervous system; notochord; and pharyngeal arch. Orthologous to human CDH10 (cadherin 10).

NR:

description
PREDICTED: cadherin-10-like

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06802 CDH10; cadherin 10, type 2, T2-cadherin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941479.2 True 2812 mRNA 0.53 10 1641101 1662293
XM_034314879.1 False 2722 mRNA 0.53 11 1641101 1662293

Neighbor

gene id symbol gene type direction distance location
cdh12a LOC108280247 coding downstream 43375 1548020 ~ 1597726 (-)
cdh18a cdh18,LOC108280183,LOC107664087,LOC107550723,LOC107585979 coding downstream 160131 1426717 ~ 1480970 (-)
ptf1a ptf1a coding downstream 378916 1260480 ~ 1262185 (-)
si:ch211-207d6.2 LOC108280519 coding downstream 424061 1153902 ~ 1217040 (-)
htr5aa htr5aa,LOC108280518,LOC103047601,LOC108435704,LOC107732551,LOC107550720,LOC107664052,LOC107586412 coding downstream 519032 1113703 ~ 1122069 (-)
mc4r mc4r,LOC108280642,LOC103023838,LOC108432248,LOC107678942,LOC107586449 coding upstream 327251 1989544 ~ 1991970 (-)
rnf152 rnf152 coding upstream 363683 2025976 ~ 2033820 (-)
buc LOC108280222 coding upstream 373710 2036003 ~ 2040032 (-)
tmem68 tmem68,LOC103025502,LOC107674304,LOC107584594,LOC107714846,LOC107602519 coding upstream 464553 2126846 ~ 2133286 (-)
zswim5 zswim5,LOC107728925,LOC107602525,LOC107584626,LOC107714849,LOC107674240,LOC107679324 coding upstream 522537 2184830 ~ 2223601 (-)
G312812 NA non-coding downstream 281678 1358030 ~ 1359423 (-)
LOC113542968 NA non-coding downstream 382137 1249872 ~ 1258964 (-)
G312657 NA non-coding downstream 706881 933680 ~ 934220 (-)
G312646 NA non-coding downstream 765461 875400 ~ 875640 (-)
G312626 NA non-coding downstream 794237 814096 ~ 846864 (-)
G313023 NA non-coding upstream 229574 1891867 ~ 1892092 (-)
G313157 NA non-coding upstream 311721 1974014 ~ 1976740 (-)
G313213 NA non-coding upstream 459675 2121968 ~ 2123604 (-)
G313198 NA non-coding upstream 463601 2125894 ~ 2126380 (-)
LOC113543303 NA non-coding upstream 514172 2176465 ~ 2180655 (-)
dlgap1a dlgap1,dlgap1a,LOC107584464,LOC107751362 other downstream 295524 1272541 ~ 1345577 (-)
rbm33b NA other downstream 589502 1005251 ~ 1051599 (-)
G313307 dsel,LOC108432253 other upstream 657476 2319769 ~ 2324566 (-)
fbxl7 fbxl7,LOC108280577,LOC107718179,LOC107689422,LOC107688519 other upstream 1006925 2669218 ~ 2712165 (-)
zbtb47a zbtb47b,znf652,LOC108280763 other upstream 1216191 2878484 ~ 2888670 (-)
G313817 sall3,LOC108435487 other upstream 1651011 3313304 ~ 3315092 (-)
fbxl4 fbxl4 other upstream 3138187 4800480 ~ 4817171 (-)

Expression


Co-expression Network