G325003


Basic Information

Item Value
gene id G325003
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1897711 ~ 1898181 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU385155
CCCAAATGTCTGCCCTTTTCATAAAAGATAATTTTTTGGGGTGGGGCTTATGGCTTGTCAAGGAGAATGGATATGATTTTCTTATGGCTGACAAAGGTCAAATGAAGATTTAGCAGAAGGAGGCACATCATGGGAACTCCATCTATTTCCAGGgattaaagataaaataaattattttaaaaagaaaacaagaaaagcaGGGAAGGGGAAAAAGTGTTAGGTGTACAAAAGGTCAATAGAATAAATTGGGACAGTAAATATCTCGAGGGGTTGACCTTATAAACGGATTCATCTGCAGCTCAAGGcgagcctacacacacacacacacacacacacacacacacacacacacacacacacactggagcacTGAAAACACCCAGCTGTAAGAATCAACAGCCATGAAGATGAAAATTAATCAGAAATATTGTTATATTCCGTATATAgataatatatagatatatacaaaCA

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU385155 True 471 lncRNA 0.37 1 1897711 1898181

Neighbor

gene id symbol gene type direction distance location
rgl2 LOC108256293,LOC108433895 coding downstream 134305 1735617 ~ 1763406 (-)
si:dkey-33i11.1 fcgr2a coding downstream 179118 1714275 ~ 1718593 (-)
hpn hpn,si:dkey-33i11.3,LOC107728492,LOC107726693 coding downstream 189465 1686703 ~ 1708246 (-)
LOC113533022 fxyd1,LOC108433901,LOC108256298,LOC103360964,LOC107728489 coding downstream 229974 1650037 ~ 1667737 (-)
LOC113532527 NA coding downstream 259092 1631443 ~ 1638619 (-)
ntrk1 ntrk1,LOC107688245,LOC107592455,LOC107592146 coding upstream 54649 1952830 ~ 1976952 (-)
LOC113532949 apoa2 coding upstream 112008 2010189 ~ 2011797 (-)
tmem176l.1 NA coding upstream 369829 2268010 ~ 2272046 (-)
si:dkey-152b24.7 LOC108256182 coding upstream 437292 2335473 ~ 2339983 (-)
mex3a mex3a,mex3b,LOC107688221 coding upstream 479297 2377478 ~ 2384403 (-)
G324980 NA non-coding downstream 149703 1747657 ~ 1748008 (-)
G324970 NA non-coding downstream 172947 1724010 ~ 1724764 (-)
LOC117595768 NA non-coding downstream 222804 1669102 ~ 1674907 (-)
G324726 NA non-coding downstream 711634 1119771 ~ 1186077 (-)
G325056 NA non-coding upstream 8762 1906943 ~ 1948211 (-)
G325058 NA non-coding upstream 21090 1919271 ~ 1920472 (-)
G325090 NA non-coding upstream 121999 2020180 ~ 2020405 (-)
LOC113532493 NA non-coding upstream 157002 2055183 ~ 2142077 (-)
LOC113533076 NA non-coding upstream 317289 2215470 ~ 2238076 (-)
LOC113533106 LOC108256308,LOC108256309,LOC108261853 other downstream 329205 1557016 ~ 1568506 (-)
kif13a kif13a other downstream 446711 1403264 ~ 1451000 (-)
G324748 NA other downstream 526682 1370476 ~ 1371029 (-)
scap scap,LOC107600505,LOC107717374,LOC107668298,LOC107713836 other downstream 555640 1294865 ~ 1342071 (-)
nek11 LOC108256279 other downstream 795594 1043313 ~ 1102117 (-)
G325145 mtmr11 other upstream 190078 2088259 ~ 2097435 (-)
LOC113532533 LOC108256344 other upstream 1331840 3230021 ~ 3251447 (-)
LOC113532799 rftn1 other upstream 1421363 3319544 ~ 3404418 (-)
znf385d znf385d other upstream 1822508 3720689 ~ 3796368 (-)
vsig10l vsig10l other upstream 2059316 3957497 ~ 3966115 (-)

Expression


Co-expression Network