LOC113532527


Basic Information

Item Value
gene id LOC113532527
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1631443 ~ 1638619 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923925.2
GCCCACACATGGGTGTGGTCACATGATGATAAGCAGCAAACAAGATCAAGAAGAACGGTAGTAGAGTGGTGAGAGGACAGTCAGACACCCGAATACGAACGTGCGACTCATCAGAGCAAGCAGAATTAAAAATGGATCCCAGCTACAGAAATGAAAAGGCTGATCATCCTCCAGCGTACCAGGCAGATATGGGGTATCCTCCAGCCCAAGGGGTCGCCCCTCAGGGTGGTTACCCTCCTGCCCAGGGGTACGGCGGTGCACCTTATGGAGCCCAGGCGTACCCAGGTCAGGCTGCCGTCACCGTCCAGCCCACCGTGTACGTGACCCCGGTGACTCACATGAGCCCCGTCCCTGATTACCTGGGTTACTCCATCTTCACCATGCTGTGCTGCTGCTTACCTCTGGGCATCGCCGCTCTCATCTACTCCATCAACACTCGGGACGCCAACTTGACCGGCAACAGAGACCTGGCGCTGAGAAACTCTCACACGGCACGGCTCCTGAACCACATCGCTCTGGGGCTCGGGATCACCGCCTTCGTCATCTCCATCATCTTCGTCATCGTCTCGGCTACGGCTGTGTGGAAAGTATCCAATTATAACTGAAACATGAGAGAGATTTCCCAAGACACAATTACTCATaacaagattattttttttatattgcatattgattcattttgtatGTACAGCATCAGGCAAaagtttgtttgcttttatgtCAAATAATAGTGAGCTAATGTCTAAATATGACGTGACAGCAgagatttatataaatacataaagagCTCAGTGCACGTTCATGGGTTATGCGTTTGTAGCATATACATGCATCTGTTCCTATTCCTGTATTTCAATGTATAATAACACCAttctataattattaaataattaataattatacagCAGCACTTGTTTGTTATCCACTGCTTTCCAATTTTAGTCATTATTACATAAActtacctaataaactggctaCTTGGTGTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923925.2 True 988 mRNA 0.46 2 1631443 1638619

Neighbor

gene id symbol gene type direction distance location
LOC113532853 atp4a coding downstream 4883 1608001 ~ 1626560 (-)
gapdhs g3pt,gapdhs,LOC107577408,LOC107709572,LOC107686531 coding downstream 24754 1593470 ~ 1606689 (-)
LOC117595786 LOC108256309,LOC108256308,LOC108261853 coding downstream 41256 1577798 ~ 1590187 (-)
zgc:158766 LOC108256307,LOC107601962 coding downstream 102042 1486378 ~ 1529401 (-)
LOC113532544 NA coding downstream 149568 1475543 ~ 1481875 (-)
LOC113533022 fxyd1,LOC108433901,LOC108256298,LOC103360964,LOC107728489 coding upstream 11418 1650037 ~ 1667737 (-)
hpn hpn,si:dkey-33i11.3,LOC107728492,LOC107726693 coding upstream 48084 1686703 ~ 1708246 (-)
si:dkey-33i11.1 fcgr2a coding upstream 75656 1714275 ~ 1718593 (-)
rgl2 LOC108256293,LOC108433895 coding upstream 96998 1735617 ~ 1763406 (-)
ntrk1 ntrk1,LOC107688245,LOC107592455,LOC107592146 coding upstream 314211 1952830 ~ 1976952 (-)
G324726 NA non-coding downstream 445366 1119771 ~ 1186077 (-)
G324731 NA non-coding downstream 462112 1144586 ~ 1169331 (-)
G324729 LOC108256269,LOC108256268,LOC108256164,LOC108256276 non-coding downstream 503826 1126844 ~ 1127617 (-)
G324649 NA non-coding downstream 676051 880609 ~ 955392 (-)
G324650 NA non-coding downstream 749157 881639 ~ 882286 (-)
LOC117595768 NA non-coding upstream 30483 1669102 ~ 1674907 (-)
G324970 NA non-coding upstream 85391 1724010 ~ 1724764 (-)
G324980 NA non-coding upstream 109038 1747657 ~ 1748008 (-)
G325003 NA non-coding upstream 259092 1897711 ~ 1898181 (-)
G325056 NA non-coding upstream 268324 1906943 ~ 1948211 (-)
LOC113533106 LOC108256308,LOC108256309,LOC108261853 other downstream 62937 1557016 ~ 1568506 (-)
kif13a kif13a other downstream 180443 1403264 ~ 1451000 (-)
G324748 NA other downstream 260414 1370476 ~ 1371029 (-)
scap scap,LOC107600505,LOC107717374,LOC107668298,LOC107713836 other downstream 289372 1294865 ~ 1342071 (-)
nek11 LOC108256279 other downstream 529326 1043313 ~ 1102117 (-)
G325145 mtmr11 other upstream 449640 2088259 ~ 2097435 (-)
LOC113532533 LOC108256344 other upstream 1591402 3230021 ~ 3251447 (-)
LOC113532799 rftn1 other upstream 1680925 3319544 ~ 3404418 (-)
znf385d znf385d other upstream 2082070 3720689 ~ 3796368 (-)
vsig10l vsig10l other upstream 2318878 3957497 ~ 3966115 (-)

Expression


Co-expression Network