zgc:158766 (LOC108256307,LOC107601962)


Basic Information

Item Value
gene id zgc:158766
gene name LOC108256307,LOC107601962
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1486378 ~ 1529401 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034297826.1
gggagagggagggagagagagagagggaggagagctTTACTGCCACTCTCACACTCCCTCAGGACGACTCGCACAGCTGACTCTCTGAGTTTTTGCGAGAGtgacttccacacacacacacacacacacacacacacaccgtcccAGCCATGGACAATCCCGACCCGCGTCCTTCTCCGGACATGACGGATCTGTAGCACTCTCCGGATTTTAATCTGCACTCGTTCGGATTTGGATTATCTATTTCTTCCCCGAGCGTTATTTATTCGAGGAGGACGACATGCACACGCGAGCCCAGTCCCGCAGCTGTGACAATTACCTGAGCATAAAGgactCGGAGTCATTAGACAGCTGTATCCAGAGCACTCTGTCGTCAGTTTACGCTCCGTTCAGGGCGACGGCGTCCACGGTGCTGCTGCAGCTCTTCAGCGTGGTGGAGCGTCAGTACGGCGGAGACGGCCTGCGCTGCCTCATCGACTTCCTCCTGCCTGCCAAGAAGATCTTACACACCATCCAGAGAGAGAGCTgcCTGCGATTTAAAGGCCTGCTGTTGTATCACGAGGGCTGGCCGCTGTGCATCCACGAGAAGGTGGTCGTGCAGCTCGCTCCTTTGCACAAAGTGCGCCTGAGGCAGGGCGACTTCTACCTGCAGCTGGTGCCTCTGGGCCGCAAGGCCGCCAAGCTGGTGATAAAATGCCTGGCACGGAGCGGACGCGCGCTGGCCGAGATCACCGTGCCTGAGGGAATGTACCCCCGAGTCTTCACCGCCGACTTCCTGCAGGATGTGACACGCGAACGGAACCTGCAACCCCTCCAGAACTGCCTGCTGAGCGCCGGCGCTGCCGTGTACCGAACCCCCTGGAGGAACGTGGtgaaccctgtgtgtgtgagaaacgcCAACGAGGGCATCATGCAGCCGGGAGCGCTGAGCATCGGCCACCTCGGCACCTGCAGCACCCACGGATCCACGGGGACGTTGGACAGCCGGAGGAGCTCCAGAGACTCGCTGTGCTCTCAGGGCGCCGATTCCACCGTGTCCGAACCGCTCCTGAGGCGCAGAACCAGCGAAAGCGACACGTACACAAACGCTGCCACGTTGCCCGCAGAGGAAAAAGCCCCGAGCCCCGGCACGGATGTAGAGGGCGGGAGCAGGAGAGGAGGAAATACCAAGTGCCTCTCCTTCAGCACGGATCTCAGCACGCCGAGACGGCGCCAATCCAGAGACTCGGCTACTTTCGAGACGCGACGACTGTTTCGCAAGTCGTACATGGAAGCGTTACAGAACCCCATGAATCTCGGCTCAAGCTCCGAGTCGGTCCCAGAGGAAGGCAGCGAGCCAGCGGTTGAGGTCGAGACCAGGCCGAGATGTGACTCGGACACACACTCGGCGAGGCAGGGATCCCTGCAGCGCCGCCTCTCGCCCCTCCTCCCGCTGCAGCGCAGCATCAGGTCCGAGAGGCGCTCCAAGTCTCTGGAACGGTCTGGAAGGCGCGTCAAAGGTCACCGAACGCGCTCGTCCTCGGGCGGAGGATCTCCCAAGAAGCTGATGAACGGCTGCGCGATACGCTTCGGCAGACTCGACCTCGAGGTGGCGTTTTACAGCGCCGAGAGACGCGGCAGCAAAGGAGACTCAGggcTTCCTGGCTCCCCCTCCATCTCCGAGTCCAGGAGGAGCAGCAGCGCTGGTGAAGACTCTCCTAAAGTCTCGTCTCGCTGTGCGTCCGTCTCAGCTCCGCCTCCTGTAGCTCCTCCTTCTCCTgtagctcctcctcctcttgcAGCGCCACCCACAGGCTGTTCCACTCCACTGCCCTTATtactcacacacctcagagagaTAGACATACAGCTctcaggtaatCGAGACCGCAGTGGGCGTTCTGTTCTCCAGGTGTGTATGAGGAACCGAGTGTGGACAGACGAACGCTTCACCTCCAGAGAGCTCACCTGCCTGCTGAGCTACTACTGCTCCACACTCCgGAAGGAGAAGAGGGATCTGGGTCTGACCGTGCTGGTGGACTCGCGGAGACAGCAGGCCAGTCCTGTGCTCTTCTCAGCTCTGTCTCAGcttcagGCTTCTCTGCCAAACGCACTTTACTCGGTTTTGTTGCTCTCGGACAAAGAGGCATCCGTCAAGCTCGAGAGAGATTTCTCCGTtccatgtgaagTGTTAACTTCTCTGAAAGCCCTTCTGAAGCACATCGACTCGTCTCAGCTCACACGAGACCTGGACGGCACTTTCCACTACGACCATCACCACTACATCCAGTTCAGACAgAAAATGGAGCAGTTCTGCAGCAGCTGCAGCGCCGCCATCTCGTCTCTGCGGAGGTCGATAGACGTcctgagcagcagcagcagcctggACACTGTGAAGgacgtGTCAGAGACGATCAGCCAGCAGAGGAAcctgatgaagtgtgtgttggaggATTCGCAGCTGAACCACCTCAGGCTGGAGGGAGGAACGTTTCTCGCACGTGTCAGGAAAGAGGAGACGAGTGAAACCGAGAGCTACAGGGACGCCGTGGACGCAGCGTGCACGCTCTACAACCAGATGGACGAGGAGGTTCATAAACTCGTCATCCTGTCCAACAAATCCCTCCATCAGCTGGAGAACCTGCTGGAGCTGCGCACCTTTCAGGAGGAGACCGAGCGGATGAAGCGCTGGTTCAGTGCGGAGGCAGAGAAGCACTTGGCTCCGCTGGACTCTCTCAGTTTTACGCTCAGCTCCCTGCAGGAAATGAGGCGGAGCCTGGAGCAGTTCACCGAGGAGGCAGCGCTCCAGCAGAAGCAGGCCGCGGCGATGACGCAGGACCCCAGACGAGTGTCCAGTTCCACGCTACTGGAGCTCAAGCAGCACATGAGCTCCGTCCTCCAGCgagcacacacacgcaggagCGAGCTGGACATCCTGATCAACCTCTACGAGTTCTACGACTCgGCTCAGCAGTGGATGACGCACTGCGAGGACTATTTCAAGCGTCTGAATTTGGAAGAGAGCATTATGAGCTTCTCTCCTGAAGTTCTGCAGACACTGCAGGACTACCACAACGAGGCCACCAAGTTCTCTCTGGAGAACTTCAGCTCTCTGAACGACACGGTGGCCACGCTGGGCAGCCCCCGCCAGCTCCACCACTGGAACCACATCTGGATGAAGTGCCAGGAGACCCGGAAACAGCTGGAGGAGTTGTTGGAGAGAGCGGCAGTGCGAGAGGAACCCGTGTCTGACTCTTCTCTAACCTCTGACCTTTCAAAACCCAGGGAAATACCTGTAATATGTGTGGATTTGCAATGCGGAGAGAGCAGAAGTTCTCTTCCTGAGATTAAACACACCTTCGAGTTCGAGGATGAGAAACCTCACTCGGCAGGACCGTTCTCTAAAAACGACTCTCCTTTCAgatcttttcttttccctcccGAGAGAGAAAAACTCACTCCGTCGCCGCTGGACGACACGGACAGCGACTGCACCGTCGACTCGTCGTATTCCTGTCACTCGGAGCCTGGAGCGAGGCACCGCAGGCCTCCGctgaagaagatgatgaagaagacGGTGAGCTCTGATCTCTCGGGACACCACGGCTACCTGGGCGTCTACATCAAAGGGCTGGAGCTCAGCAACAACACGTGTGTGGAGAAGAAGCTGCAGAGGCCACACGTGAAGAGTCCAGTGCTGGCACGGAGCAGGAGCCTCCCATCTCCCTCCCTAAGTCAGGGAAGACCGGGGGATGgtgagagcaagagacagagcagTAAAATCCAGCACATCATGGACGAGATGATctccacagagagagagtacgTGCGTTCCCTCTCCTACATCATGGAGCACTACTTCCCAGAGATGGAGAGGCCGGACCTGCCGCAGGACCTCCGAGGAAAGCGCAGCATCATCTTCGGAAACCTGGAGAAGCTGTGTGACTTCCACAGCCAGTACTTCCTGAAGGATCTGGAGCAATGTGCACATTCCCCGCTTTCAGTCAGCACCTGCTTCCTGAGACACgaggaCCAGTTTGGAATGTACGCTCTGTACAGTAAGAATAAACCGCGCTCCGACGCCCTGCTCACCAGCCACGGCAACGCTTTCTTCAAGAATAAGCAGATGGAGCTGGAGGACAAGATGGACCTGGCGTCCTACCTGCTGAAGCCCATCCAGAGGATGAGTAAATACGCCCTGCTGCTGAAGGACCTGATAAAAGAGTGCAGCCAATCGCAGGAGCAGGAGCTCGCCGACCTCAGGACCGCCGAGGAGATGGTCAAGTTCCAGCTGCGCCACGGCAACGACCTGCTCGCCATGGACGCCATCAGAGGATGTGATGTGAATCTGAAGGAACAGGGCCAGCTGAGGTGTCAGGACGAATTCATAGTGTGGTGCGGACGCAGGAAGTACCTCCGGCACGTCTTCCTGTTCGAGGACCTCATCCTGTTTAGCAAAACCAAAAAGATCGAAGGGGGATACGACATCTACATCTATAAACAATCTTTTAAGACCGCAGAGATCGGGATGACGGAGAACGTGGGCGACAGCGGCCTCCGGTTCGAGATCTGGTTCCGGCGCAGGAAGTCCCAGGACACGTTCATCCTGCAGGCCAGCTCGGCTGAGAGCAAGGCGGCCTGGACCTCCATCATCGGCAAGATCCTGTGGAGACAAGCGCTCAGAAACAGAGAGCTGCGGATGCAGGAGATGGTCTCTATGGGAATCGGGAACAAGCCCTTCATGGACATCAAACCGAGCGACGCAGCCATCAGCGACCGAGCTGTAGATTACATCATGAAAGGCACAGAGTCACGCACTCGTTCCTCCATCTCCGTCTCCTCCTATGATCACTCCAGCCCGTTCAAGAGACCGCACTCCACCATCTCCAACagcagctcctcctcctccagtagccactcctcttcctccttcatgAGCTCCCTCAACCTGTCGCTCTTTAGCTCCGCCCCCCACCCGCCTCTCGCCCACTGGCACTACGACTGCATCGAGGAGGACGAGCTGGAGCACGATGCCGCCATGCAGCCCTCCATGGtcacaGAGGGTTCCGAGTCGTCGTCTCACAGCACCTCGAGCGACGGCGTGAACAGCGTGAACAGCGTGAGCGCTCTGTCCGTCCCCCATCACTCGTCCCTCATCATGGACTCCTTCAGCAGCGAGTCATCCTTCCTCTGTTCCTCCTCCGTCTCCTCGTCTCCGTCACACCACTTCCACAAGGAGCACAACGACACTAACAGCTTCATCACAGCGctGTGACATCACTTCTACGCGGCGGTTCCGGTCCACGCGGCAGGACGGGAGCGAGGCGGCGTGCGGCGTCTAAACACTGAACTCTGCTGTAAATACACACGATTTCACACTGTTCCTATTTTTAAACGAATCGTTACGCAGTACTTAAACCCGTCACACTGCTGGTACGCTGCGGACTCGACATCCAGCGCATCGATGAACTAAAgtttccttttcatctttaaaaaaaaaagcacaatttgaggtttttttgtcttttgttgttgtttgtttgtttgtttgtttgtttgttttgtaagcGTGTTCTGTACAGAAATGGTTCCTCGTTAACGTCCTTATTTTTAGAGCCGGCACTactaataaaatcatttcccaACCTTC

Function

NR:

description
PREDICTED: pleckstrin homology domain-containing family G member 4B-like

GO: NA

KEGG:

id description
K23860 PLEKHG4; pleckstrin homology domain-containing family G member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034297826.1 True 5629 mRNA 0.57 25 1486378 1529401

Neighbor

gene id symbol gene type direction distance location
LOC113532544 NA coding downstream 4503 1475543 ~ 1481875 (-)
ptdss1a LOC108256259,LOC107677659,LOC103360057 coding downstream 13273 1458423 ~ 1473105 (-)
LOC113532865 nhlrc1 coding downstream 31825 1453025 ~ 1454553 (-)
grinab LOC108256260,LOC103028312,LOC108412215,LOC106588904 coding downstream 85412 1392716 ~ 1400966 (-)
LOC113532867 NA coding downstream 95119 1387757 ~ 1391259 (-)
LOC117595786 LOC108256309,LOC108256308,LOC108261853 coding upstream 48397 1577798 ~ 1590187 (-)
gapdhs g3pt,gapdhs,LOC107577408,LOC107709572,LOC107686531 coding upstream 64069 1593470 ~ 1606689 (-)
LOC113532853 atp4a coding upstream 78600 1608001 ~ 1626560 (-)
LOC113532527 NA coding upstream 102042 1631443 ~ 1638619 (-)
LOC113533022 fxyd1,LOC108433901,LOC108256298,LOC103360964,LOC107728489 coding upstream 120636 1650037 ~ 1667737 (-)
G324726 NA non-coding downstream 300301 1119771 ~ 1186077 (-)
G324731 NA non-coding downstream 317047 1144586 ~ 1169331 (-)
G324729 LOC108256269,LOC108256268,LOC108256164,LOC108256276 non-coding downstream 358761 1126844 ~ 1127617 (-)
G324649 NA non-coding downstream 530986 880609 ~ 955392 (-)
G324650 NA non-coding downstream 604092 881639 ~ 882286 (-)
LOC117595768 NA non-coding upstream 139701 1669102 ~ 1674907 (-)
G324970 NA non-coding upstream 194609 1724010 ~ 1724764 (-)
G324980 NA non-coding upstream 218256 1747657 ~ 1748008 (-)
G325003 NA non-coding upstream 368310 1897711 ~ 1898181 (-)
G325056 NA non-coding upstream 377542 1906943 ~ 1948211 (-)
kif13a kif13a other downstream 35378 1403264 ~ 1451000 (-)
G324748 NA other downstream 115349 1370476 ~ 1371029 (-)
scap scap,LOC107600505,LOC107717374,LOC107668298,LOC107713836 other downstream 144307 1294865 ~ 1342071 (-)
nek11 LOC108256279 other downstream 384261 1043313 ~ 1102117 (-)
G324579 NA other downstream 758744 726627 ~ 727634 (-)
LOC113533106 LOC108256308,LOC108256309,LOC108261853 other upstream 27615 1557016 ~ 1568506 (-)
G325145 mtmr11 other upstream 558858 2088259 ~ 2097435 (-)
LOC113532533 LOC108256344 other upstream 1700620 3230021 ~ 3251447 (-)
LOC113532799 rftn1 other upstream 1790143 3319544 ~ 3404418 (-)
znf385d znf385d other upstream 2191288 3720689 ~ 3796368 (-)

Expression


Co-expression Network