grinab (LOC108256260,LOC103028312,LOC108412215,LOC106588904)


Basic Information

Item Value
gene id grinab
gene name LOC108256260,LOC103028312,LOC108412215,LOC106588904
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1392716 ~ 1400966 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924935.2
GACTGGAATAGGAAAAGATGGAATAAAGATGGCGGAGGAATAACATAAGAAGCTCCAGCGATATTGTCGTGAAGAGAATTGGGTTTTTTGGTCGGTTAAAGGTTGGATTAAACGCCGGATAATCgcagaaaagtgtaaaagagcCACCATGTCGCAGAATAAAAGTGGATACGTGCAGTTCGTGGACAGCGGCTCACCTCCGCTGCCAAACCCCGGGCAGCCGAACCCCGTCGGATTCGTCCTGCCTCCTCCGGACTACAACGGGATGCCCGGAGTCCCGGGAGAACCCGGAGCGCCCGGCGGTGTTCCCTTTCCTCCTCCGGGAGCTTTTATGCATCCGATGTACGGTCAGGGCGGACCCGGATATCCACCGGCTCCCTTTCCACAAACGACTCCCTACAACCCAGCACCTCCGAATCCGAATCTCACTCCAACTCCGAATCCGGCTCCGGCTCCGAATCCGGCTCCGTACCAGTACACTCCGGATGCATCCAACAACTTTTACCAAAGTGACGAGCCTCCTCCGGTGTACCACCACGAGGAGATCACCATCTCGGGATTCGATGACAAAGCAGTGAGACGAGCGTTCATCcgcaagGTCTTCCTCGTTCTCACCGTGCAGCTGGTTGTCACCTTCTCCTTCGTCGCTCTCTTCACCTTTGAGCACAACATCAAGACGTTCGTGAGGCACAACATCTGGACCTACTACGTGTCCTACATCATCTTCTTTGTTTCGCTCATCACCATCAGCTGCTGCGGAGAATTCCGCCGCAAACACCCGTGGAACCTGGTCGCCTTGTCGGTGTTGACCCTGAGCTTGTCGTACATGACGGGCATGATCGCCAGCTTCTACGACACGGACGCCGTCATCATGGCCGTCGGCATCACCGTGGTGGTTTGCTTCACAGTGGTGCTCTTCTCTCTGCAGACCAAGTACGACTTCACTTCCTGTGCCGGAGTCCTGTTCGTGTGCCTGATCGTCCTCTTCGTCTTCTCGATCCTCTGCATCTTCATCCGTAACAACATCCTGCAGATCGTGTACGCCTCGCTGGGCGCGCTCCTCTTCACCTGCTTTTTGGCCGTGGACACGCAGCTGCTCCTGGGGAACAAGAAACTGTCTCTGAGTCCCGAGGAGTACGTGTTCGGGGCGCTGAACCTTTACCTGGACATCATCAACATCTTCCTGTTCATCCTACAGATCATCGGCCGAAGCCGTAACTAACACACAGCAGGGAGATTAAACGCAGGCCTTTTACATGTCGCTTCTGTCTTTAATATCTTTAAAACTAAACTAGCCTGTTTTATCAAcgtttgtgtaaaaaaatgaataaataaaatgtgaaccagcttattattaatattattattattattattattattattattattatattaaataccaATCCAGTAAACGGATTCCACTTTCGCTCCACACAGTCAATCCATCTTAGCTAATGTCGCTAACATGTAATGGTTTAGCGTGGTGTGCTAAACGCGCATCCCAAAATGGCGTCTCGTCAATCAGCTTTTGTGGCGTCGTCTCCAACAaatctggacttttttttttttttt

Function

NR:

description
protein lifeguard 1-like isoform X1

GO: NA

KEGG:

id description
K24205 TMBIM, LFG; protein lifeguard

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924935.2 True 1575 mRNA 0.50 7 1392716 1400966

Neighbor

gene id symbol gene type direction distance location
LOC113532867 NA coding downstream 1457 1387757 ~ 1391259 (-)
smpd5 LOC108256263 coding downstream 5667 1369754 ~ 1387049 (-)
gpatch3 gpatch3 coding downstream 24039 1361057 ~ 1368677 (-)
sacm1lb sacm1lb,sacm1l,LOC108256262,LOC108412214,LOC107673333,LOC107709536 coding downstream 33228 1348029 ~ 1359488 (-)
elp6 elp6 coding downstream 46072 1342979 ~ 1346644 (-)
LOC113532865 nhlrc1 coding upstream 52059 1453025 ~ 1454553 (-)
ptdss1a LOC108256259,LOC107677659,LOC103360057 coding upstream 57457 1458423 ~ 1473105 (-)
LOC113532544 NA coding upstream 74577 1475543 ~ 1481875 (-)
zgc:158766 LOC108256307,LOC107601962 coding upstream 85412 1486378 ~ 1529401 (-)
LOC117595786 LOC108256309,LOC108256308,LOC108261853 coding upstream 176832 1577798 ~ 1590187 (-)
G324726 NA non-coding downstream 206639 1119771 ~ 1186077 (-)
G324731 NA non-coding downstream 223385 1144586 ~ 1169331 (-)
G324729 LOC108256269,LOC108256268,LOC108256164,LOC108256276 non-coding downstream 265099 1126844 ~ 1127617 (-)
G324649 NA non-coding downstream 437324 880609 ~ 955392 (-)
G324650 NA non-coding downstream 510430 881639 ~ 882286 (-)
LOC117595768 NA non-coding upstream 268136 1669102 ~ 1674907 (-)
G324970 NA non-coding upstream 323044 1724010 ~ 1724764 (-)
G324980 NA non-coding upstream 346691 1747657 ~ 1748008 (-)
G325003 NA non-coding upstream 496745 1897711 ~ 1898181 (-)
G325056 NA non-coding upstream 505977 1906943 ~ 1948211 (-)
G324748 NA other downstream 21687 1370476 ~ 1371029 (-)
scap scap,LOC107600505,LOC107717374,LOC107668298,LOC107713836 other downstream 50645 1294865 ~ 1342071 (-)
nek11 LOC108256279 other downstream 290599 1043313 ~ 1102117 (-)
G324579 NA other downstream 665082 726627 ~ 727634 (-)
dyrk1b dyrk1b,LOC108256247,LOC107685988,LOC107719113,LOC107592201 other downstream 817445 549060 ~ 575271 (-)
kif13a kif13a other upstream 2298 1403264 ~ 1451000 (-)
LOC113533106 LOC108256308,LOC108256309,LOC108261853 other upstream 156050 1557016 ~ 1568506 (-)
G325145 mtmr11 other upstream 687293 2088259 ~ 2097435 (-)
LOC113532533 LOC108256344 other upstream 1829055 3230021 ~ 3251447 (-)
LOC113532799 rftn1 other upstream 1918578 3319544 ~ 3404418 (-)

Expression


Co-expression Network