LOC113532867


Basic Information

Item Value
gene id LOC113532867
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1387757 ~ 1391259 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924542.2
ATGGATGAACGTGAGTTTAACGCCTCGCTGCTTCTTCAGAACGAGAAGCTCAGGCGTCAGGTGGAGGATCTGAAAACGCTGCAGAGTGTGGTGAAGGAGAATCTGGAGCTGCGCTCGAGGCTGGACAGCTTCCCCTCTAGCAGCGATGCGGACGCGGAGAAAAGCGAGATGAGCGCAGggaggaaacccacgttCCCGTGGCGTGACAGTCTTGTGGACGAGAGCTCATTCAGAGCCGGTCTTATCGCACCTCATCGCACGTCGTCTTCGGCACGTCCTGACACGTCGTCCTCCTCGTCCCGCCAGACGGTGAAAGATCCCGAGCGGTTGCTGGGGGAAATCGCCTTCCAGCTGGAGCGCAGGATCCTCTCCCACGTCTTCTACAAACAGACGAGACTGTACGGCTTCACCGTGCAGAACATACAGGACAAGATCATCCAGGTGTCTACACATCCTCTGACAGGACAGGTGGACGAGGCGTACAGGTCTGAGATGACCGAGCGCCATGTGGATCTGATGGATCGGCTTGGTGCTTTGGGCTACAACACGACGCTCCATCCTCCCTTCACCGAGTTCATCATCAACACGTACGGCATCCTGAAGGAACGACCCGACACACACATGGCTCAGGAGCGGGGCTACAACGACCTGGACCTCCTGCGGTGCGTGATGGTGGAGATGGCGCCGTCCAGCCTGCTGAAAGACCTGCTGGTGCTCTTCAGCTGCCTGTGCTACCTGGCGGAGAAGGACGGAAAGCCGATCATCCTGTGGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924542.2 True 774 mRNA 0.58 4 1387757 1391259

Neighbor

gene id symbol gene type direction distance location
smpd5 LOC108256263 coding downstream 708 1369754 ~ 1387049 (-)
gpatch3 gpatch3 coding downstream 19080 1361057 ~ 1368677 (-)
sacm1lb sacm1lb,sacm1l,LOC108256262,LOC108412214,LOC107673333,LOC107709536 coding downstream 28269 1348029 ~ 1359488 (-)
elp6 elp6 coding downstream 41113 1342979 ~ 1346644 (-)
LOC113532999 LOC108261539 coding downstream 92228 1286989 ~ 1295529 (-)
grinab LOC108256260,LOC103028312,LOC108412215,LOC106588904 coding upstream 1457 1392716 ~ 1400966 (-)
LOC113532865 nhlrc1 coding upstream 61766 1453025 ~ 1454553 (-)
ptdss1a LOC108256259,LOC107677659,LOC103360057 coding upstream 67164 1458423 ~ 1473105 (-)
LOC113532544 NA coding upstream 84284 1475543 ~ 1481875 (-)
zgc:158766 LOC108256307,LOC107601962 coding upstream 95119 1486378 ~ 1529401 (-)
G324726 NA non-coding downstream 201680 1119771 ~ 1186077 (-)
G324731 NA non-coding downstream 218426 1144586 ~ 1169331 (-)
G324729 LOC108256269,LOC108256268,LOC108256164,LOC108256276 non-coding downstream 260140 1126844 ~ 1127617 (-)
G324649 NA non-coding downstream 432365 880609 ~ 955392 (-)
G324650 NA non-coding downstream 505471 881639 ~ 882286 (-)
LOC117595768 NA non-coding upstream 277843 1669102 ~ 1674907 (-)
G324970 NA non-coding upstream 332751 1724010 ~ 1724764 (-)
G324980 NA non-coding upstream 356398 1747657 ~ 1748008 (-)
G325003 NA non-coding upstream 506452 1897711 ~ 1898181 (-)
G325056 NA non-coding upstream 515684 1906943 ~ 1948211 (-)
G324748 NA other downstream 16728 1370476 ~ 1371029 (-)
scap scap,LOC107600505,LOC107717374,LOC107668298,LOC107713836 other downstream 45686 1294865 ~ 1342071 (-)
nek11 LOC108256279 other downstream 285640 1043313 ~ 1102117 (-)
G324579 NA other downstream 660123 726627 ~ 727634 (-)
dyrk1b dyrk1b,LOC108256247,LOC107685988,LOC107719113,LOC107592201 other downstream 812486 549060 ~ 575271 (-)
kif13a kif13a other upstream 12005 1403264 ~ 1451000 (-)
LOC113533106 LOC108256308,LOC108256309,LOC108261853 other upstream 165757 1557016 ~ 1568506 (-)
G325145 mtmr11 other upstream 697000 2088259 ~ 2097435 (-)
LOC113532533 LOC108256344 other upstream 1838762 3230021 ~ 3251447 (-)
LOC113532799 rftn1 other upstream 1928285 3319544 ~ 3404418 (-)

Expression


Co-expression Network