gpatch3 (gpatch3)


Basic Information

Item Value
gene id gpatch3
gene name gpatch3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1361057 ~ 1368677 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923904.2
attttaaaatcaccAACATCCGGTTTCCGGTTAGACGCTCATAACAAAGATGGCGGCCTCGGGGGAAGAAGAGGGAGTGTATTTCGTGGTAAACAACATTCCTGTAAACTTTCGCTCTGCCGATCTGAGAAATTATTTCAGCCAGTTTATAGAAAGCGGAggatttttgtgttttcattacCGACACAGACCGGAAGTGAGGATAAACCCAGCGGAAGCAGAAAAGGctcagagaggagaggaggaggatgaggagggtgagggtgaggaaggagagagaaagagcgaggtTAAAGCTGAAGCTTCGTGTTGCTGTGTGCTGTctgtgaagagaagagaagcggAGCGCTTTGTGAAGATGTACAGCGGAAATCAGTGGATCGACTCGAAGGGAAACTGGCTGGTGAAGCGGTGTCTGATCCGGAGGATTAAAGTGTCCGATCACACCGATCCGGATGCTTTTCCGTATAAGACGAAGGCGGAGCTGAAGCGTCCCACGGCGCACGCGGAGCGTTTCACTAAAGCCGACCTGCGCGCCCTGCCCGAGCTGACTCCGCCCGCTCTCATGCCCGCCGGTAACGTCGGCACGCCGGTCAGCGTGTTCCTGCAGCTCATCCAGTCCTGCCGCTTTCCTCCGCGCCTCATCCGCAAACTCGGCCTCACCTTCCCCAAGACGGGGTCGCACCGTCGCTACGGTAACGTCCCCTACCACTACAACACGGCCGTGGTGGCGGCGAGCGAGGAGAGCGTGTTCACTGCGGGAGGGGTGGAAATCTGCGGGCCGGGGGGCGTCGCTCCGCCGAAGAGCGCCGAGAAACCGACAGACGGGACGCACGAGAACGAGGACCGGCCAATCAGAGCGGAGCGTCCAGCGGCGGGGGCGGAgagcgaggaggaggaggaggagtcaGGACCAGACGATgacgATGACCGGTGTGAGGAATGGGAGCGACACGAGGCTCTGCACGAGGACGTGACGTCTCAGGAGAGGAGTAAAGAGCGTCTGTACGAGGAGGAGATCGAGCTGAAGTGGGAGAAAGGAGGATCAGGCCTCGTGTTCTACACCGACGCTCAGTactggcaggaggaggagggggATTTTGATGAGCAAACGGCAGACGACTGGGACGTTGACATGAGCGTCTACTACGATAAAGACGGAGGAGACATGGACTCCAGAGACTACGTACGCATGCGCTATGAGAAGCGACTGAGGGACGGGGTGCAGCAGCCGGAGATCAACCAGCAGAAAATCGGCACCTTCGAGAAATTCACAAAGGGCGTGGGGCGGCGTGTGATGGAGAAACAGGGCTGGAAAGACGGCGAGGGACTCGGACACTCTCGCTCAGGGATTCCCGAGGCTTTAGAGAACGAAGGACAGCATCCCAACTGTAAGAGAGGCTTCGGGTATCACGGGGAGAAGCTCAGCTCTTTCCAACCGCTTAAAAAACCTCGGCCTGATTTTCACATATCGACCGTTTACGACGAGCCGAAAGACATCGACCGGGGCGACACACTCCTCCGCCGGCAGCCGAGCGCcagcatgaaacacacacactggcatcCAGAGGAAAGCACCGAGCCACACAGATGACCTTTTACTCCATTTATAACTcaagcatttgtttgtttgtttgtttgtttgtttttagatcttgtttatgtacagtactgtgcaaaagtctttgcaccctatatattttttttttatattttga

Function

symbol description
gpatch3 Predicted to enable nucleic acid binding activity. Acts upstream of or within camera-type eye development and cranial skeletal system development. Is expressed in head; musculature system; and otic vesicle. Orthologous to human GPATCH3 (G-patch domain containing 3).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923904.2 True 1718 mRNA 0.55 7 1361057 1368677

Neighbor

gene id symbol gene type direction distance location
sacm1lb sacm1lb,sacm1l,LOC108256262,LOC108412214,LOC107673333,LOC107709536 coding downstream 1569 1348029 ~ 1359488 (-)
elp6 elp6 coding downstream 14413 1342979 ~ 1346644 (-)
LOC113532999 LOC108261539 coding downstream 65528 1286989 ~ 1295529 (-)
LOC113532917 NA coding downstream 75178 1281446 ~ 1285879 (-)
LOC113533061 LOC108256273 coding downstream 85218 1273393 ~ 1275839 (-)
smpd5 LOC108256263 coding upstream 1077 1369754 ~ 1387049 (-)
LOC113532867 NA coding upstream 19080 1387757 ~ 1391259 (-)
grinab LOC108256260,LOC103028312,LOC108412215,LOC106588904 coding upstream 24039 1392716 ~ 1400966 (-)
LOC113532865 nhlrc1 coding upstream 84348 1453025 ~ 1454553 (-)
ptdss1a LOC108256259,LOC107677659,LOC103360057 coding upstream 89746 1458423 ~ 1473105 (-)
G324726 NA non-coding downstream 174980 1119771 ~ 1186077 (-)
G324731 NA non-coding downstream 191726 1144586 ~ 1169331 (-)
G324729 LOC108256269,LOC108256268,LOC108256164,LOC108256276 non-coding downstream 233440 1126844 ~ 1127617 (-)
G324649 NA non-coding downstream 405665 880609 ~ 955392 (-)
G324650 NA non-coding downstream 478771 881639 ~ 882286 (-)
LOC117595768 NA non-coding upstream 300425 1669102 ~ 1674907 (-)
G324970 NA non-coding upstream 355333 1724010 ~ 1724764 (-)
G324980 NA non-coding upstream 378980 1747657 ~ 1748008 (-)
G325003 NA non-coding upstream 529034 1897711 ~ 1898181 (-)
G325056 NA non-coding upstream 538266 1906943 ~ 1948211 (-)
scap scap,LOC107600505,LOC107717374,LOC107668298,LOC107713836 other downstream 18986 1294865 ~ 1342071 (-)
nek11 LOC108256279 other downstream 258940 1043313 ~ 1102117 (-)
G324579 NA other downstream 633423 726627 ~ 727634 (-)
dyrk1b dyrk1b,LOC108256247,LOC107685988,LOC107719113,LOC107592201 other downstream 785786 549060 ~ 575271 (-)
smarcc1a smarcc1,LOC107600486,LOC107666814,LOC107686050 other downstream 906234 374199 ~ 454823 (-)
G324748 NA other upstream 1799 1370476 ~ 1371029 (-)
kif13a kif13a other upstream 34587 1403264 ~ 1451000 (-)
LOC113533106 LOC108256308,LOC108256309,LOC108261853 other upstream 188339 1557016 ~ 1568506 (-)
G325145 mtmr11 other upstream 719582 2088259 ~ 2097435 (-)
LOC113532533 LOC108256344 other upstream 1861344 3230021 ~ 3251447 (-)

Expression


Co-expression Network