G326557


Basic Information

Item Value
gene id G326557
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 4192950 ~ 4194247 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU386940
CTAATTGATGGTTTATTTAGCTGCGCGATCGAAATGTTTGGACTATGGCCGGCGTGAAACATTGCCAAAATGAATAATGTTCAGTAGACGTAGTGTCATTTAGCTCAGAAATGAGCTACAGCACTTCGCTAACGAGGCTGGATGcaCTTTCCTTACATGGTCAACATTTCCTGTTCTTGTTATTTGTTGCCATGACGGGTAATTAGTCTGACTTGCATCTTGTTAAACCTTGGAAAAACAGCACAACAATGctaaaaacctttattttttgttatctCGTTTTCTTGGGCCagctttttaaatgaacatgaaaTAAATTGCTGCAAGCAATCtctggggtccaagcactgctTTATGTTTTGAAACACTATCAATTGAACTCTCTCTCAATGATCTAGGGTATAATACTATAGATCTCTCTCTCAATGATCTAGGGTATAATACCTCATACTCGCTCAGATACTTTGGTttccttgtgtgtttgtgaagtaTTTTTAAGTATATCTACCTGCTGCATTTCAAGGCCCAGTTTCCCAAAAGATTCAAGTTAAAATAATCTTAAACTGCAgatagtgtttagtgtttaatgcTCTACCAGGTAGCAATGAACTTTGTCCTCAGATGCTTTTAGGAAACTCCGCCATGAGGTGCATTTTCTAGCTTTGACTCCGTTTTATAGTTCCCAGGTTTCCTGAGCGTTTTCAGGTTTTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU386940 True 712 lncRNA 0.38 2 4192950 4194247

Neighbor

gene id symbol gene type direction distance location
etfb etfb,LOC107552519 coding downstream 214271 3968848 ~ 3978679 (-)
lim2.5 lim2,LOC102215845,LOC100699404,LOC103139272 coding downstream 241990 3945550 ~ 3950960 (-)
nek10 nek10 coding downstream 276982 3892887 ~ 3915968 (-)
efhb efhb coding downstream 480432 3701334 ~ 3712518 (-)
LOC113532763 satb1 coding downstream 520817 3616595 ~ 3672133 (-)
LOC113532945 LOC108256150,LOC108442742 coding upstream 23321 4217568 ~ 4222172 (-)
LOC113532947 NA coding upstream 31713 4225960 ~ 4233987 (-)
LOC113532948 NA coding upstream 48107 4242354 ~ 4244860 (-)
LOC113532587 LOC108256689 coding upstream 56695 4250942 ~ 4256972 (-)
si:dkeyp-97a10.3 LOC108256724 coding upstream 67574 4261821 ~ 4273813 (-)
G326488 NA non-coding downstream 115982 4061916 ~ 4076968 (-)
G326236 NA non-coding downstream 191125 4001618 ~ 4001825 (-)
G326235 NA non-coding downstream 191435 3999109 ~ 4001515 (-)
LOC113532993 NA non-coding downstream 311066 3873923 ~ 3881884 (-)
G326133 NA non-coding downstream 314433 3821905 ~ 3878517 (-)
G326597 NA non-coding upstream 190828 4385075 ~ 4394774 (-)
LOC113532978 NA non-coding upstream 214244 4408491 ~ 4411401 (-)
G326630 NA non-coding upstream 307342 4501589 ~ 4502601 (-)
G326830 NA non-coding upstream 773051 4967298 ~ 4968547 (-)
G326875 NA non-coding upstream 910585 5104832 ~ 5105966 (-)
vsig10l vsig10l other downstream 226835 3957497 ~ 3966115 (-)
znf385d znf385d other downstream 396582 3720689 ~ 3796368 (-)
LOC113532799 rftn1 other downstream 788532 3319544 ~ 3404418 (-)
LOC113532533 LOC108256344 other downstream 941503 3230021 ~ 3251447 (-)
G325145 mtmr11 other downstream 2095515 2088259 ~ 2097435 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other upstream 114359 4308606 ~ 4347253 (-)
ubr5 ubr5 other upstream 737908 4932155 ~ 4977527 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other upstream 1635227 5829474 ~ 5978379 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other upstream 2062156 6256403 ~ 6383588 (-)
G328342 LOC108256401 other upstream 2862547 7056794 ~ 7062428 (-)

Expression


Co-expression Network