G332334


Basic Information

Item Value
gene id G332334
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15065975 ~ 15113514 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU393529
ATATAGACACAACATGAGTGCCGAAAAGTTCAGACTCAAGATTGAAAAAGGATTTTAATTAACTTCGTTAATAATTTACAAACGCACTCTGGAGAGCTGCAGGAACAAATTTCAGTGACATATATATAGACACGcattcccaaacacacacacacacacacacacacacacacacacacacatttctactcTTCACTCTTTTACATTACACTCCAAAATAACATTTCCCTTTTTAAATCACCATTAACACTATTACAATCTTTTATATTAttcagctttaacacagctgtCAGTTTTAAcatcatttgatttttttttttaaaagctgtgtTCTCTTACATGGAGACAAAAAGcaatatcattatcatcattattatttttatcactaTTATTACTGTGTGATGTAAATTATGTTGCTGTGTCTAACTTTACCATCAGAGcatgtttaaacagtatctgaaAACTCTGAGCTTCAGAATAAGGAACAAAGATCTATAGTGCGCTTAAAAAACATTACTGAGCTTGTGTGTCGCCCTggtttttttgtgcagttttattctttttggcCAGCAGAAAAACATAACCTATATAATttcagaatcacacacacaactctagGCCAGTTCACTTCTACTCTGTCTTCTTTTCTGGCCtccactcactcattctctctctttgtccagcaggtgagtgtgtctgtgctcCCACAAGCGAATTGCACCATCCCACTGCAGGAAAATAAGGAAGAGATGCTAGTGTTCTTACTACAACACTGAGTATTTTTACAGCTGTTTCAAATGTtaccaaactttgaacatcatGCAGAGCACCATGaaattca
>TU393531
aacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatttctactcTTCACTCTTTTACATTACACTCCAAAATAACATTTCCCTTTTTAAATCACCATTAACACTATTACAATCTTTTATATTAttcagctttaacacagctgtCAGTTTTAAcatcatttgatttttttttttaaaagctgtgtTCTCTTACATGGAGACAAAAAGcaatatcattatcatcattattatttttatcactaTTATTACTGTGTGATGTAAATTATGTTGCTGTGTCTAACTTTACCATCAGAGcatgtttaaacagtatctgaaAACTCTGAGCTTCAGAATAAGGAACAAAGATCTATAGTGCGCTTAAAAAACATTACTGAGCTTGTGTGTCGCCCTggtttttttgtgcagttttattctttttggcCAGCAGAAAAACATAACCTATATAATttcagaatcacacacacaactctagGCCAGTTCACTTCTACTCTGTCTTCTTTTCTGGCCtccactcactcattctctctctttgtccagcaggtgagtgtgtctgtgctcCCACAAGCGAATTGCACCATCCCACTGCAGGAAAAGAGCTGCTGATGATGTTATCCTGGTATGGGTGCCAGCTGACGTCTCTCACACATGCCTCGTGACCCGCCAGTCTGGACACAACACGGCCCGTCAGAACATCATAAACTacaagagaagaggaaagggcGGTCAAAGGAAGTAGAGAAAGCGCTGGAATAGTGTAGGCCAAATTCTACCCTAATAAACAATGGATTTCTCTATTTCGCTCACTGATGATTTTCCCAGTTGAGCAGCCGCTGTAGATGAACTTCTGTCCTGTGCTGAACTCGGGGGAGAAACGGCAGCGGATGAGCGTGTGAAGAACGCCGTGACCTCGATACGTCATCACCGACGTATCACCTGTCAGTTTGTGCCTCTTCAAag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU393529 False 841 lncRNA 0.36 2 15111663 15112523
TU393531 True 1001 lncRNA 0.42 3 15065975 15113514

Neighbor

gene id symbol gene type direction distance location
eya1 eya1,LOC107657823 coding upstream 217891 14796644 ~ 14848084 (+)
xkr9 xkr9 coding upstream 344398 14714795 ~ 14721577 (+)
pabpn1 pabpn1,LOC108256547,LOC107758815,LOC107589928,LOC107596039 coding upstream 488732 14565792 ~ 14577243 (+)
zfhx2 NA coding upstream 501301 14543991 ~ 14564674 (+)
LOC113541072 NA coding upstream 530655 14529664 ~ 14535320 (+)
flj11011l ube2w,LOC103354920,LOC107725703,LOC106591739,LOC107754202 coding downstream 7712 15121226 ~ 15129603 (+)
si:ch73-173p19.1 LOC108256550 coding downstream 269472 15382986 ~ 15397527 (+)
tpk1 tpk1 coding downstream 473788 15587302 ~ 15614891 (+)
panx1a panx1 coding downstream 506634 15620148 ~ 15629965 (+)
hephl1a LOC108256642 coding downstream 963377 16076891 ~ 16096771 (+)
G332248 NA non-coding upstream 109908 14955860 ~ 14956067 (+)
G332238 NA non-coding upstream 120763 14944991 ~ 14945212 (+)
G332111 NA non-coding upstream 362705 14688163 ~ 14703270 (+)
LOC117595809 NA non-coding upstream 1103791 13958024 ~ 13962184 (+)
G331502 NA non-coding upstream 1683339 13380644 ~ 13382636 (+)
G332348 NA non-coding downstream 88303 15201817 ~ 15202305 (+)
G332527 NA non-coding downstream 215100 15328614 ~ 15332432 (+)
LOC113541145 NA non-coding downstream 300358 15413872 ~ 15418923 (+)
LOC113541248 NA non-coding downstream 457349 15570863 ~ 15579798 (+)
G332650 NA non-coding downstream 478574 15592088 ~ 15617234 (+)
G331476 NA other upstream 1807559 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 2353297 12706939 ~ 12712678 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 2909188 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 3317416 11717415 ~ 11748559 (+)
G330257 NA other upstream 4091060 10973264 ~ 10974915 (+)
stau2 stau2,LOC107691439 other downstream 20839 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 138121 15251635 ~ 15265895 (+)
G332636 NA other downstream 452661 15566175 ~ 15566663 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 1986650 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 2171568 17285082 ~ 17302004 (+)

Expression


Co-expression Network