G336034


Basic Information

Item Value
gene id G336034
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 286849 ~ 287215 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU397921
ggtgttacaggcgtaccaggctgacctgcttacagagctggatgagcagggggagagtacgtctgagcaggtagctgagctcaggcgggccgctgatctgtccctccgcgccaccaaggagaccgcccgtgctatcggtcggtctatggcagtcctggtggcggcggagaggcatctctggctgaccctgtccgatatgaaagagaaggacagggtcgtgctcatggacgccccgcttactccctcgggcctgtttggcgacgcggtagactccgtcgtcgagagataccagcaggcccgtgctcaggtggcggcgttccagcggttcctcccccgtcgctctctagctcgtggggctgccgggcgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU397921 True 367 TUCP 0.65 1 286849 287215

Neighbor

gene id symbol gene type direction distance location
LOC117595853 LOC108256799,LOC108256839 coding upstream 3427 282493 ~ 283422 (+)
LOC113529058 LOC108256799,LOC108262172 coding upstream 29699 256206 ~ 257150 (+)
LOC113529059 NA coding upstream 46421 237438 ~ 240428 (+)
LOC113529060 LOC108262172 coding upstream 56847 229061 ~ 230002 (+)
LOC113529061 LOC108256842,LOC108256840,LOC108256799,LOC108262172 coding upstream 60152 225753 ~ 226697 (+)
LOC113529054 LOC108256799 coding downstream 42399 329614 ~ 330558 (+)
LOC113529052 LOC108256839 coding downstream 48516 335731 ~ 336675 (+)
LOC117595854 LOC108256799 coding downstream 58094 345309 ~ 346253 (+)
LOC117595883 NA coding downstream 65503 352718 ~ 353438 (+)
LOC117595855 LOC108256799,LOC108256839 coding downstream 71742 358957 ~ 359901 (+)
G336016 NA non-coding upstream 15966 213146 ~ 270883 (+)
G335897 LOC107737118 non-coding upstream 142378 127038 ~ 144471 (+)
G335896 NA non-coding upstream 144319 125194 ~ 142530 (+)
G335887 LOC108257212 non-coding upstream 233032 50894 ~ 53817 (+)
G335882 NA non-coding upstream 256701 29943 ~ 30148 (+)
G336041 NA non-coding downstream 66815 354030 ~ 404443 (+)
G336078 NA non-coding downstream 153224 440439 ~ 440785 (+)
G336111 NA non-coding downstream 306101 593316 ~ 593539 (+)
G336126 NA non-coding downstream 327057 614272 ~ 620153 (+)
G336115 NA non-coding downstream 335517 622732 ~ 626949 (+)
G336161 LOC108257052 other downstream 452154 739369 ~ 749674 (+)
G336172 NA other downstream 506902 794117 ~ 794695 (+)
G336213 NA other downstream 686454 973669 ~ 976321 (+)
mllt11 mllt11 other downstream 845740 1132955 ~ 1136124 (+)
G336334 NA other downstream 982594 1269809 ~ 1335574 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G9888 NA non-coding NC_056700.1 CM032069.1 6690390 ~ 6690752 (-)
mexican tetra (Astyanax mexicanus) G10903 NA non-coding NC_035898.1 CM008301.1 16181950 ~ 16215622 (+)