G336115


Basic Information

Item Value
gene id G336115
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 622732 ~ 626949 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU398012
AGGGGAGTTAAACACCTAACGCTCATACACACAGGTTCACAGCTCTCTCGCAAAGTCTCCCCTTATCCCGAGCATCGCTGAGATATAGTTACTACATTTAATCATCAGAGGGAGATCGTAAGCTTGTTAGAGCTTCTTCACATCCACAGATCTGGTTATGGAAGTTCACGCAGCGAGCTCATCACTCATTATCACACTTTATCctctaaaatatttcaaactgaAGATAAACTGGCTTGCAGCAGGAACcggctttatttttaattatttaaaatccatatatactgtatttcaacTGGCAAACAAACTCGCAGAGGTAACagcatcttttttctttttactcagTAAGAGTGGTAAATAATTGTACAttggatattttatttaaaagagaaaaaaactcaAGTACAATGATGTAATTATCCGCTATCCATCAAACCAATCAGAAGCTGTCCTGTTTATCCTGCTCATTGCCATGGCAACCAGGTGAGTTTCAGACAGGTTTTAAAAGGCTTTAAACCATCTGACAGCAgtgtagctgcaaatcacacgtttattaatgtgctcctaATACTcttcgtttccatagtaacagcataaacaggtttatattaacgtgctccttctaatacttatcgtttccatagtaacagcataaacacagggacttgtacagcacataaacaaaaatgactGTTTCAGTGAAGTTCGGGACGTTACACTCCTGAAAACCGCATGTAAAATTAATTCTGTATGTAAGtgtcttattttaatttcatggaGTTGCTTTACAGTCACTGCGCCCCCCAGTGGCACCTGGATCCCACTGCAGCGCGACCGCCTCGCCGCGTCCCGAGTCTTAACCATCATCCGTTTATTAGTGAGTGTTAGAAACAAACCGAGAGAAGCGGAGCGTGAGGGAAGTCACGAGCGAAGGACGGCATCAGTGATGTCGCATCTGAGGATTTTTATTGAAACATGTTGTACAAAACAAAGATGAAAAGCACACGATTAactaaaaaggaaagagagagagaaaagaaaatcagctGGGCGTCGGCCGTCTGAGCTGTGAGGAAGCCATGTTGGAGCAGCGTCTCCCATCAGGAGCCAGAGTCGTCAACTCCGTCATACCTCTAAGGGAGGGGGGCGGGGTATTGGGGCAGGAGGAGGGGGTATAaagggggtggggtgggggtgtaAGGGTTGATTAGTAGAGGAAGGGGAGAAGGAGAGGGTAAGGGGAGGGTAAAAGAAGCTTCTAGAAACCGTGGACTTTGAGCTGCTCCTCTTTGGCCAGTTCAATCTGTGAGTAGAGAACAATAAACTGTCAGATTTAAACTCCTTTACTGTCGTGAtccgtctgtctgtgtgtgtgtagtgaaggtgtgtgtagtgaagggttgtgtgtgtggtgaaggtgtgtgtgtgtacctctgtgaGGAACTGGCAGATGTTTTTGCGCTGGTCTCCCTGCAGCTGGATCACTTCACCATACTCAGGGTGTTCAATCACTGTCCCATTGCATGCAAACTTctgcaacacacaaacacacacaccatcagcaaCGAGACCGTTAATTACCTGTGGACaaacaggtaaacacacacacacacctcacatcaCACTGACCTTCCCCTCTAAATTATTTACCGGGAAAAGACAACTAACCAATCAAACTTCAGTTGCTAGGCGGATTTTAgcactcagccaatcacagtAGGAGCTGCAGTGTTGATTTTGGCACAATGTAACTAACTCTATCCCTGTGTAATAAAACCCTAACAATGAAATCCGCCCGGCgactgaattctgattggttgggaCCTGAACTTATATCCCCAGTGAAGTAAACCTTCTCACATCACCCTGAGGTCTGTACgttagaatataaaatataaagtgtgtAGACAAGCGATACAGACGGACCGGACCGTGTCTCCCGCGCCGGAGCAAACGGACAacgagcctgtgtgtgtgtgtgtgtgagagagagatagcgtGTCTGCGGGAGCGAGGCTCTGACCTTCTTGAAGGCCTTGACTAGCTTCTTCTTGTCATAGTCGTCGGCGATGCCCTGCACTGTGGTCAGAGTCTTCCTGCCGTTCCTCTGCTGGATTCTTATGTGGATGTAGTCCTCAGTCCCTGCTGGGAGCCGATCATCACCCTTAGTTGCATCAGCAAAGGGgtcAAAGTTTGGAGGTTCTGGATAGCGGACATACGACACGGTTCCTTTTCCTTTCGGATGATAACGGGAGGCTCGGCCCGGTGTTTTAATGCGGGTTTAGTGCTGATTTAACGCGCTGATGGCGGTGCGGCTCTGAGCGTCTCTTCCTCAGCCGGTGGCTCTTCAGCAGCTGAAACAAAATGGCGCCGCGTCTCTTCTTTATACACGGAGGAAAAC
>TU398013
AGGGGAGTTAAACACCTAACGCTCATACACACAGGTTCACAGCTCTCTCGCAAAGTCTCCCCTTATCCCGAGCATCGCTGAGATATAGTTACTACATTTAATCATCAGAGGGAGATCGTAAGCTTGTTAGAGCTTCTTCACATCCACAGATCTGGTTATGGAAGTTCACGCAGCGAGCTCATCACTCATTATCACACTTTATCctctaaaatatttcaaactgaAGATAAACTGGCTTGCAGCAGGAACcggctttatttttaattatttaaaatccatatatactgtatttcaacTGGCAAACAAACTCGCAGAGGTAACagcatcttttttctttttactcagTAAGAGTGGTAAATAATTGTACAttggatattttatttaaaagagaaaaaaactcaAGTACAATGATGTAATTATCCGCTATCCATCAAACCAATCAGAAGCTGTCCTGTTTATCCTGCTCATTGCCATGGCAACCAGGTGAGTTTCAGACAGGTTTTAAAAGGCTTTAAACCATCTGACAGCAgtgtagctgcaaatcacacgtttattaatgtgctcctaATACTcttcgtttccatagtaacagcataaacaggtttatattaacgtgctccttctaatacttatcgtttccatagtaacagcataaacacagggacttgtacagcacataaacaaaaatgactGTTTCAGTGAAGTTCGGGACGTTACACTCCTGAAAACCGCATGTAAAATTAATTCTGTATGTAAGtgtcttattttaatttcatggaGTTGCTTTACAGTCACTGCGCCCCCCAGTGGCACCTGGATCCCACTGCAGCGCGACCGCCTCGCCGCGTCCCGAGTCTTAACCATCATCCGTTTATTAGTGAGTGTTAGAAACAAACCGAGAGAAGCGGAGCGTGAGGGAAGTCACGAGCGAAGGACGGCATCAGTGATGTCGCATCTGAGGATTTTTATTGAAACATGTTGTACAAAACAAAGATGAAAAGCACACGATTAactaaaaaggaaagagagagagaaaagaaaatcagctGGGCGTCGGCCGTCTGAGCTGTGAGGAAGCCATGTTGGAGCAGCGTCTCCCATCAGGAGCCAGAGTCGTCAACTCCGTCATACCTCTAAGGGAGGGGGGCGGGGTATTGGGGCAGGAGGAGGGGGTATAaagggggtggggtgggggtgtaAGGGTTGATTAGTAGAGGAAGGGGAGAAGGAGAGGGTAAGGGGAGGGTAAAAGAAGCTTCTAGAAACCGTGGACTTTGAGCTGCTCCTCTTTGGCCAGTTCAATCTGTGAGTAGAGAACAATAAACTGTCAGATTTAAACTCCTTTACTGTCGTGAtccgtctgtctgtgtgtgtgtagtgaaggtgtgtgtagtgaaggtgtgtgtagtgaagggtgtgtgtgtgtgtagtgaagggttgtgtgtgtggtgaaggtgtgtgtgtgtacctctgtgaGGAACTGGCAGATGTTTTTGCGCTGGTCTCCCTGCAGCTGGATCACTTCACCATACTCAGGGTGTTCAATCACTGTCCCATTGCATGCAAACTTctgcaacacacaaacacacacaccatcagcaaCGAGACCGTTAATTACCTGTGGACaaacaggtaaacacacacacacacctcacatcaCACTGACCTTCCCCTCTAAATTATTTACCGGGAAAAGACAACTAACCAATCAAACTTCAGTTGCTAGGCGGATTTTAgcactcagccaatcacagtAGGAGCTGCAGTGTTGATTTTGGCACAATGTAACTAACTCTATCCCTGTGTAATAAAACCCTAACAATGAAATCCGCCCGGCgactgaattctgattggttgggaCCTGAACTTATATCCCCAGTGAAGTAAACCTTCTCACATCACCCTGAGGTCTGTACgttagaatataaaatataaagtgtgtAGACAAGCGATACAGACGGACCGGACCGTGTCTCCCGCGCCGGAGCAAACGGACAacgagcctgtgtgtgtgtgtgtgtgagagagagatagcgtGTCTGCGGGAGCGAGGCTCTGACCTTCTTGAAGGCCTTGACTAGCTTCTTCTTGTCATAGTCGTCGGCGATGCCCTGCACTGTGGTCAGAGTCTTCCTGCCGTTCCTCTGCTGGATTCTTATGTGGATGTAGTCCTCAGTCCCTGCTGGGAGCCGATCATCACCCTTAGTTGCATCAGCAAAGGGCCAAAAGTTTGGAGGTTCTGGATAGCGGACATACGACACGGTTCCTTTTCCTTTCGGATGATAACGGGAGGCTCGGCCCGGTGTTTTAATGCGGGTTTAGTGCTGATTTAACGCGCTGATGGCGGTGCGGCTCTGAGCGTCTCTTCCTCAGCCGGTGGCTCTTCAGCAGCTGAAACAAAATGGCGCCGCGTCTCTTCTTTATACACGGAGGAAAAC
>TU398015
AGGGGAGTTAAACACCTAACGCTCATACACACAGGTTCACAGCTCTCTCGCAAAGTCTCCCCTTATCCCGAGCATCGCTGAGATATAGTTACTACATTTAATCATCAGAGGGAGATCGTAAGCTTGTTAGAGCTTCTTCACATCCACAGATCTGGTTATGGAAGTTCACGCAGCGAGCTCATCACTCATTATCACACTTTATCctctaaaatatttcaaactgaAGATAAACTGGCTTGCAGCAGGAACcggctttatttttaattatttaaaatccatatatactgtatttcaacTGGCAAACAAACTCGCAGAGGTAACagcatcttttttctttttactcagTAAGAGTGGTAAATAATTGTACAttggatattttatttaaaagagaaaaaaactcaAGTACAATGATGTAATTATCCGCTATCCATCAAACCAATCAGAAGCTGTCCTGTTTATCCTGCTCATTGCCATGGCAACCAGGTGAGTTTCAGACAGGTTTTAAAAGGCTTTAAACCATCTGACAGCAgtgtagctgcaaatcacacgtttattaatgtgctcctaATACTcttcgtttccatagtaacagcataaacaggtttatattaacgtgctccttctaatacttatcgtttccatagtaacagcataaacacagggacttgtacagcacataaacaaaaatgactGTTTCAGTGAAGTTCGGGACGTTACACTCCTGAAAACCGCATGTAAAATTAATTCTGTATGTAAGtgtcttattttaatttcatggaGTTGCTTTACAGTCACTGCGCCCCCCAGTGGCACCTGGATCCCACTGCAGCGCGACCGCCTCGCCGCGTCCCGAGTCTTAACCATCATCCGTTTATTAGTGAGTGTTAGAAACAAACCGAGAGAAGCGGAGCGTGAGGGAAGTCACGAGCGAAGGACGGCATCAGTGATGTCGCATCTGAGGATTTTTATTGAAACATGTTGTACAAAACAAAGATGAAAAGCACACGATTAactaaaaaggaaagagagagagaaaagaaaatcagctGGGCGTCGGCCGTCTGAGCTGTGAGGAAGCCATGTTGGAGCAGCGTCTCCCATCAGGAGCCAGAGTCGTCAACTCCGTCATACCTCTAAGGGAGGGGGGCGGGGTATTGGGGCAGGAGGAGGGGGTATAaagggggtggggtgggggtgtaAGGGTTGATTAGTAGAGGAAGGGGAGAAGGAGAGGGTAAGGGGAGGGTAAAAGAAGCTTCTAGAAACCGTGGACTTTGAGCTGCTCCTCTTTGGCCAGTTCAATCTGTGAGTAGAGAACAATAAACTGTCAGATTTAAACTCCTTTACTGTCGTGAtccgtctgtctgtgtgtgtgtagtgaaggtgtgtgtagtgaagggttgtgtgtgtggtgaaggtgtgtgtgtgtacctctgtgaGGAACTGGCAGATGTTTTTGCGCTGGTCTCCCTGCAGCTGGATCACTTCACCATACTCAGGGTGTTCAATCACTGTCCCATTGCATGCAAACTTctgcaacacacaaacacacacaccatcagcaaCGAGACCGTTAATTACCTGTGGACaaacaggtaaacacacacacacacctcacatcaCACTGACCTTCCCCTCTAAATTATTTACCGGGAAAAGACAACTAACCAATCAAACTTCAGTTGCTAGGCGGATTTTAgcactcagccaatcacagtAGGAGCTGCAGTGTTGATTTTGGCACAATGTAACTAACTCTATCCCTGTGTAATAAAACCCTAACAATGAAATCCGCCCGGCgactgaattctgattggttgggaCCTGAACTTATATCCCCAGTGAAGTAAACCTTCTCACATCACCCTGAGGTCTGTACgttagaatataaaatataaagtgtgtAGACAAGCGATACAGACGGACCGGACCGTGTCTCCCGCGCCGGAGCAAACGGACAacgagcctgtgtgtgtgtgtgtgtgagagagagatagcgtGTCTGCGGGAGCGAGGCTCTGACCTTCTTGAAGGCCTTGACTAGCTTCTTCTTGTCATAGTCGTCGGCGATGCCCTGCACTGTGGTCAGAGTCTTCCTGCCGTTCCTCTGCTGGATTCTTATGTGGATGTAGTCCTCAGTCCCTGCTGGGAGCCGATCATCACCCTTAGTTGCATCAGCAAAGGGgtctggaacacacacacacacacacacacacagagaaactcacattacacacagcaGAACACTTTAAAGTGGATcaataataacaaacacactgcattaaAGCCTGTAAAGTGAGGCATTACAACTATATTAGTCACGTTTTTGGATAAATTACATACAATGTAACTGAGTTTATGttaaactgtagtaataaacacagaaaaaatgtgtcaaaaaaaaattagactgTTTTCTGTCCACTGATGCTTTAAATACCCCACAATTTACAACCACATTCAGTAATATACATCTTTTATAGATCTTATTCaccactttattttatattaaccAGAGTGTGAACTCATTTTTCATAAAATCCTAAGTTTTACCCTATATTCTCAGTGTTACGTGTTTATTCAAAAACAATTAGGAGTGTACTGCAAAGGAATTTCTCAACTAATGATGCATTTGATActgaaaatggcataaaattTACACTTCCATCTTATTTTCCACATTTCTACTGACAACTTCATTACTAAAGTAGTATAAgtatgttctttatttatttattaaaaacccgttcacattaaacatggaGTATAAAAGTCTATTACTGCAGTTTATCTTATAAATAATGGAGTGTCCTGATGGAAAACCCGCTTCAGCTCCTTCTAGAACAGGATCAGTTGCGCCAGGAGCTAAATATACCGCGCCTGGGTCTCATCCCAACCCGCTCGCGCTCCCTGCCCACGCGCCCTACCTGCGCCGGAGCGCGCGCCCTCTGTAGGGCACTAGCGCGAGCACGGGGGTGGGTTTGAGACGCGGCCCTGTCAGGCATTTTCTAAAAACGGCGAAGCTCCTTGTGACGGATTaagttttaaaaacacactacCTCCATGAGCGAGAGCGCTCAACCAcctaaacatatataaatacacgCACATATACACCACCTGGAGATAAAGCGAAAAAAAACTTCTTGACTGActtgaaggaaaagaaagagagcgcTAGGATAAAGGCCTGACTGACGTAGTGTTTTTCACACCCGTATTGCAAAACCCCACCCTCACGCGCTCTGATTGGCTACCAGCGAGCAGGCCGTGAGCCTATAGGCTGAGCGCTGATACAATTCTGACATTATCCAATCACAGCACAGGAGGCGGGATGATCGGAAAACGGATAGGTAACAAAAAAGCTGAGACGTCGATTTTTTTTTACGCGACACGCATCCGATCAGCTAACATCATCATCCTGACTAACAAAGCGCCAGTTTCTGttcaatttaaaaagaaataaaagattaaataaaaattcgATACAATAAACACCGAGTTTTGACATTTGCACGCACAGAAGCCGAGCTAGCTTTTGTTAGCCGCGTCCGCCATTTTTTATCCGCCCTTCCCCCACACACAGTTAGCCGCTATGCTAACTTACCTCAGCGCcagaacacaaaaacacaccggggaaataatgaaaaaaaacacgAACTAAAAATTCTCTTTTCAAAAGATTTAAGATAAAACGTTAAATCACTTTCACAATCCCGACGTCACTTTTATAAAGCGGTTACAAAAAGCgaataaaaaatactattttaaaagatatttaaataaGAACTCGACAGCAATAAGATTAAgaataacaaataaacagatcattttttgttaggagttatatttttgtttgacaACGTCATTATTTTTGGCAGATTAGTGAGAGGAGaataaatgctaatgctaacaccgTTAGCTAATCCCGTTTGTCGTCGAGGCGATTTTGAAGATAAATCTTACCAAAAGTTTGGAGGTTCTGGATAGCGGACATACGACACGGTTCCTTTTCCTTTCGGATGATAACGGGAGGCTCGGCCCGGTGTTTTAATGCGGGTTTAGTGCTGATTTAACGCGCTGATGGCGGTGCGGCTCTGAGCGTCTCTTCCTCAGCCGGTGGCTCTTCAGCAGCTGAAACAAAATGGCGCCGCGTCTCTTCTTTATACACGGAGGAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU398012 False 2401 lncRNA 0.46 3 622732 626949
TU398013 False 2438 lncRNA 0.46 2 622732 626949
TU398015 True 4181 lncRNA 0.43 2 622732 626949

Neighbor

gene id symbol gene type direction distance location
LOC117595880 NA coding upstream 60414 561278 ~ 562318 (+)
LOC117595881 NA coding upstream 82011 539688 ~ 540721 (+)
LOC117595859 NA coding upstream 126414 485216 ~ 496318 (+)
LOC117595878 LOC108259807 coding upstream 183116 428318 ~ 439616 (+)
LOC117595858 NA coding upstream 228542 393549 ~ 394190 (+)
LOC113528990 LOC108438405,LOC108438407,LOC108256992,LOC107727715,LOC107753917 coding downstream 32919 659868 ~ 664284 (+)
LOC113528991 LOC108256995,LOC108256994,LOC108438408,LOC108438412,LOC107666325,LOC107753917 coding downstream 48148 675097 ~ 678530 (+)
LOC113529047 LOC108256995,LOC108256994,LOC108438408,LOC107666325 coding downstream 55331 682280 ~ 685488 (+)
LOC113528992 LOC108257051,LOC108438410 coding downstream 63807 690756 ~ 693496 (+)
LOC113528988 LOC108257047 coding downstream 79458 706407 ~ 711509 (+)
G336126 NA non-coding upstream 2579 614272 ~ 620153 (+)
G336111 NA non-coding upstream 29193 593316 ~ 593539 (+)
G336078 NA non-coding upstream 181947 440439 ~ 440785 (+)
G336041 NA non-coding upstream 218289 354030 ~ 404443 (+)
G336016 NA non-coding upstream 351849 213146 ~ 270883 (+)
G336141 NA non-coding downstream 4825 631774 ~ 632301 (+)
G336143 NA non-coding downstream 16982 643931 ~ 644138 (+)
G336167 NA non-coding downstream 141246 768195 ~ 772828 (+)
LOC113528997 NA non-coding downstream 148926 775875 ~ 779026 (+)
G336202 NA non-coding downstream 262869 889818 ~ 906892 (+)
G336034 NA other upstream 335517 286849 ~ 287215 (+)
G336161 LOC108257052 other downstream 112420 739369 ~ 749674 (+)
G336172 NA other downstream 167168 794117 ~ 794695 (+)
G336213 NA other downstream 346720 973669 ~ 976321 (+)
mllt11 mllt11 other downstream 506006 1132955 ~ 1136124 (+)
G336334 NA other downstream 642860 1269809 ~ 1335574 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G16377 NA non-coding CI01000001 null 4966069 ~ 4970361 (-)
rainbow trout (Oncorhynchus mykiss) G41384 NA non-coding NC_048565.1 CM023219.2 38666784 ~ 38666999 (+)
bowfin (Amia calva) G14755 NA non-coding CM030122.1 CM030122.1 26380051 ~ 26382420 (+)