G16377


Basic Information

Item Value
gene id G16377
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4966069 ~ 4970361 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU18322
TGCTGTGGGTCGCTGTAGTCATCCAAGTCTAACTAAGGCAGTGTACTTGGTAGTTCATATACATTCAAGGGGGAGGGATACATAGAGTAGAGGTGGAGACAATCTAAACAAAGCATGCAAGTGCAGTGCAGGAATCAGCCCATTCCCTACATTTCCCAGCCATGATCTAATCAGCATAACGGTGTCATTCAAATGCATAGGTGTTAATCCACTCAGTCTGACAGCATGGCCCATACCTTTACATTATCATAGAGACAAAGTCACAGCTGTATCTTGAGCCAAATGGTTAGGAAGTGCATGAAGACAAAAGGTTAATGTTACAGACACCTGGGCTGCCTGCCTTGATCTCCTTAAATTGTCATTATCTTTACCTCAGAATGTTAAATACAATATACTTCACCTTAATATTTCATGTGAGGTTATGTCAGGATGTAGGATCAGCAGATCTTAAACAGATTCTTAAATTTGTAATCCCACACAGGCATTAATACAGTATAGTTTTCTACTTCCACTGAGTGTTTAAATCCAACCTTAAGATCATCTCCCATGTTTCCGTGTTGTAGTAGGAGTGTGTCCAGCCCATCTTCACTGTACCAACCAGGGGGTTTTGTCGAAAAACGTCCATCCCAAAACGATGATACATCTCTTCACATTCATCTAAAGAGATACGATCTAGACCCAACATGAAAGCCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18322 True 694 lncRNA 0.41 2 4966069 4970361

Neighbor

gene id symbol gene type direction distance location
CI01000001_04944573_04950116 TFIP11 coding downstream 15953 4944485 ~ 4950116 (-)
CI01000001_04846242_04846925 BHLHE23 coding downstream 118369 4845807 ~ 4847700 (-)
CI01000001_04757377_04759421 DNAJC5, DNAJC5.L, DNAJC5AB, DNAJC5AA coding downstream 206562 4756419 ~ 4759507 (-)
CI01000001_04746153_04754209 NA coding downstream 211860 4746133 ~ 4754209 (-)
CI01000001_04732844_04744038 NA coding downstream 222031 4732844 ~ 4744038 (-)
CI01000001_05001068_05003302 NA coding upstream 30180 5000541 ~ 5003417 (-)
CI01000001_05003724_05017009 PM20D1.2, PM20D1 coding upstream 33294 5003655 ~ 5017009 (-)
CI01000001_05017930_05027838 NA coding upstream 47159 5017520 ~ 5027838 (-)
CI01000001_05062950_05065565 NA coding upstream 91936 5062297 ~ 5065565 (-)
CI01000001_05155976_05158742 NA coding upstream 185560 5155921 ~ 5158742 (-)
G16378 NA non-coding downstream 553 4964457 ~ 4965516 (-)
G16376 NA non-coding downstream 1706 4962467 ~ 4964363 (-)
G16375 NA non-coding downstream 5278 4959321 ~ 4960791 (-)
G16373 NA non-coding downstream 34096 4931758 ~ 4931973 (-)
G16371 NA non-coding downstream 39121 4926685 ~ 4926948 (-)
G16379 NA non-coding upstream 952 4971313 ~ 4972241 (-)
G16380 NA non-coding upstream 2228 4972589 ~ 4972952 (-)
G16382 NA non-coding upstream 6191 4976552 ~ 4977675 (-)
G16383 NA non-coding upstream 9366 4979727 ~ 4980066 (-)
G16384 NA non-coding upstream 11617 4981978 ~ 4982318 (-)
G16332 NA other downstream 8227 4950689 ~ 4957842 (-)
G15736 NA other downstream 164674 4800901 ~ 4801395 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other downstream 237862 4725927 ~ 4728210 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other downstream 487924 4468209 ~ 4523431 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 566554 4392314 ~ 4399804 (-)
G16462 NA other upstream 252416 5222777 ~ 5229585 (-)
G16664 NA other upstream 1373743 6344104 ~ 6347955 (-)
G16753 NA other upstream 1614119 6583054 ~ 6615589 (-)
G17789 NA other upstream 1867164 6837525 ~ 6890414 (-)
CI01000001_06932075_06937182 NA other upstream 1965716 6931621 ~ 6937231 (-)

Expression


Co-expression Network