G16379


Basic Information

Item Value
gene id G16379
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4971313 ~ 4972241 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU18324
TTTAATTTAATTACATAAACCTCTGAAAAATGTAAAACCAGAATAAAGAAATAAATACATCAGTCTATAAATATTGACATTCATACAGAATTTACATTTGCATATGTAATGGTTTCATGGCAGAAGTGCTCAGTACATGCATGGCTGTGTACACGGCTGCATATTTGGACATGAAAATGGACATGAAATACTGATTTGATTTGTAACTTCTCTAACAATGTTAACAATGCCCTTCAAAATAAATTTTGTGATGCTCTTGTAATTAGTTTTCATCCAGACATATGCATACATTCAACTGATTACTCGTCAGCACTGTCCACTCAAGCCCAGCGCTGCTGCAGCTCCCACGCTTTCCCACCGATCCAGTCCCGTGTTTTCCATATTGCTGTGCGCTCTGCCATCAGCACTTCGCACAGACGTTCCAGTTTGGGTTGGTTCCGGTCCAAGTACAGCTGTGTGTCTTTCTGCAGCTGTTGAAGCACTCCAGGCCTGCTTTCATCCAGTGTCACGTTGGAACTCAGCATCGGGTTAAAGCGAAAATACACGTTCGGTGATAAGAGGTCACCCAATAGAGTGTGAACACCTAAACATGGCAATATAAACAAATGATTGCCCAACCTGCTGGGTAGTTTTATTTAACTCAACTATTGTTTAAAAATGACTGTATTGCTTGCTTAAAATGAACCCAAAGTACGTTGGGAATTAACATTTACTAATATGTTTAATAGATGAACATTTATTAATAAGTGTAATGAATAATAATTAAACAATAAACATTTATTAAATTGCTTATTAATAATTGTTTACCTTTTGATTATTATTGTTGCCTTTAGTAATTATGTGTCTGATTTTTAATTTCCAACCTATTTTGGGTTCATTTTAAGGCAGCCGTATAATCATTTTTAAACAATAGTTGGGTTATATAAAAC
>TU18325
TTTAATTTAATTACATAAACCTCTGAAAAATGTAAAACCAGAATAAAGAAATAAATACATCAGTCTATAAATATTGACATTCATACAGAATTTACATTTGCATATGTAATGGTTTCATGGCAGAAGTGCTCAGTACATGCATGGCTGTGTACACGGCTGCATATTTGGACATGAAAATGGACATGAAATACTGATTTGATTTGTAACTTCTCTAACAATGTTAACAATGCCCTTCAAAATAAATTTTGTGATGCTCTTGTAATTAGTTTTCATCCAGACATATGCATACATTCAACTGATTACTCGTCAGCACTGTCCACTCAAGCCCAGCGCTGCTGCAGCTCCCACGCTTTCCCACCGATCCAGTCCCGTGTTTTCCATATTGCTGTGCGCTCTGCCATCAGCACTTCGCACAGACGTTCCAGTTTGGGTTGGTTCCGGTCCAAGTACAGCTGTGTGTCTTTCTGCAGCTGTTGAAGCACTCCAGGCCTGCTTTCATCCAGTGTCACGTTGGAACTCAGCATCGGGTTAAAGCGAAAATACACGTTCGGTGATAAGAGGTCACCCAATAGAGTGTGAACACCTAAACATGGCAATAT
>TU18328
CAGAAGTGCTCAGTACATGCATGGCTGTGTACACGGCTGCATATTTGGACATGAAAATGGACATGAAATACTGATTTGATTTGTAACTTCTCTAACAATGTTAACAATGCCCTTCAAAATAAATTTTGTGATGCTCTTGTAATTAGTTTTCATCCAGACATATGCATACATTCAACTGATTACTCGTCAGCACTGTCCACTCAAGCCCAGCGCTGCTGCAGCTCCCACGCTTTCCCACCGATCCAGTCCCGTGTTTTCCATATTGCTGTGCGCTCTGCCATCAGCACTTCGCACAGACGTTCCAGTTTGGGTTGGTTCCGGTCCAAGTACAGCTGTGTGTCTTTCTGCAGCTGTTGAAGCACTCCAGGCCTGCTTTCATCCAGTGTCACGTTGGAACTCAGCATCGGGTTAAAGCGAAAATACACGTTCGGTGATAAGAGGTCACCCAATAGAGTGTGAACACCTAAACATGGCAATAT
>TU18326
CAGAAGTGCTCAGTACATGCATGGCTGTGTACACGGCTGCATATTTGGACATGAAAATGGACATGAAATACTGATTTGATTTGTAACTTCTCTAACAATGTTAACAATGCCCTTCAAAATAAATTTTGTGATGCTCTTGTAATTAGTTTTCATCCAGACATATGCATACATTCAACTGATTACTCGTCAGCACTGTCCACTCAAGCCCAGCGCTGCTGCAGCTCCCACGCTTTCCCACCGATCCAGTCCCGTGTTTTCCATATTGCTGTGCGCTCTGCCATCAGCACTTCGCACAGACGTTCCAGTTTGGGTTGGTTCCGGTCCAAGTACAGCTGTGTGTCTTTCTGCAGCTGTTGAAGCACTCCAGGCCTGCTTTCATCCAGTGTCACGTTGGAACTCAGCATCGGGTTAAAGCGAAAATACACGTTCG
>TU18327
TTTAATTTAATTACATAAACCTCTGAAAAATGTAAAACCAGAATAAAGAAATAAATACATCAGTCTATAAATATTGACATTCATACAGAATTTACATTTGCATATGTAATGGTTTCATGGCAGAAGTGCTCAGTACATGCATGGCTGTGTACACGGCTGCATATTTGGACATGAAAATGGACATGAAATACTGATTTGATTTGTAACTTCTCTAACAATGTTAACAATGCCCTTCAAAATAAATTTTGTGATGCTCTTGTAATTAGTTTTCATCCAGACATATGCATACATTCAACTGATTACTCGTCAGCACTGTCCACTCAAGCCCAGCGCTGCTGCAGCTCCCACGCTTTCCCACCGATCCAGTCCCGTGTTTTCCATATTGCTGTGCGCTCTGCCATCAGCACTTCGCACAGACGTTCCAGTTTGGGTTGGTTCCGGTCCAAGTACAGCTGTGTGTCTTTCTGCAGCTGTTGAAGCACTCCAGGCCTGCTTTCATCCAGTGTCACGTTGGAACTCAGCATCGGGTTAAAGCGAAAATACACGTTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18324 False 929 lncRNA 0.40 1 4971313 4972241
TU18325 False 599 lncRNA 0.41 1 4971643 4972241
TU18328 False 479 lncRNA 0.46 1 4971643 4972121
TU18326 False 430 lncRNA 0.33 1 4971692 4972121
TU18327 True 550 lncRNA 0.35 1 4971692 4972241

Neighbor

gene id symbol gene type direction distance location
CI01000001_04944573_04950116 TFIP11 coding downstream 21197 4944485 ~ 4950116 (-)
CI01000001_04846242_04846925 BHLHE23 coding downstream 123613 4845807 ~ 4847700 (-)
CI01000001_04757377_04759421 DNAJC5, DNAJC5.L, DNAJC5AB, DNAJC5AA coding downstream 211806 4756419 ~ 4759507 (-)
CI01000001_04746153_04754209 NA coding downstream 217104 4746133 ~ 4754209 (-)
CI01000001_04732844_04744038 NA coding downstream 227275 4732844 ~ 4744038 (-)
CI01000001_05001068_05003302 NA coding upstream 28300 5000541 ~ 5003417 (-)
CI01000001_05003724_05017009 PM20D1.2, PM20D1 coding upstream 31414 5003655 ~ 5017009 (-)
CI01000001_05017930_05027838 NA coding upstream 45279 5017520 ~ 5027838 (-)
CI01000001_05062950_05065565 NA coding upstream 90056 5062297 ~ 5065565 (-)
CI01000001_05155976_05158742 NA coding upstream 183680 5155921 ~ 5158742 (-)
G16377 NA non-coding downstream 952 4966069 ~ 4970361 (-)
G16378 NA non-coding downstream 5797 4964457 ~ 4965516 (-)
G16376 NA non-coding downstream 6950 4962467 ~ 4964363 (-)
G16375 NA non-coding downstream 10522 4959321 ~ 4960791 (-)
G16373 NA non-coding downstream 39340 4931758 ~ 4931973 (-)
G16380 NA non-coding upstream 348 4972589 ~ 4972952 (-)
G16382 NA non-coding upstream 4311 4976552 ~ 4977675 (-)
G16383 NA non-coding upstream 7486 4979727 ~ 4980066 (-)
G16384 NA non-coding upstream 9737 4981978 ~ 4982318 (-)
G16381 NA non-coding upstream 16328 4988569 ~ 4989338 (-)
G16332 NA other downstream 13471 4950689 ~ 4957842 (-)
G15736 NA other downstream 169918 4800901 ~ 4801395 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other downstream 243106 4725927 ~ 4728210 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other downstream 493168 4468209 ~ 4523431 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 571798 4392314 ~ 4399804 (-)
G16462 NA other upstream 250536 5222777 ~ 5229585 (-)
G16664 NA other upstream 1371863 6344104 ~ 6347955 (-)
G16753 NA other upstream 1612239 6583054 ~ 6615589 (-)
G17789 NA other upstream 1865284 6837525 ~ 6890414 (-)
CI01000001_06932075_06937182 NA other upstream 1963836 6931621 ~ 6937231 (-)

Expression


Co-expression Network