G16381


Basic Information

Item Value
gene id G16381
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4988569 ~ 4989338 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU18331
AGCTGAGGGTTAGATTGTATTTCGTGTGAGAATAAATGGTTTGTAGTCCATTAATTTGATCTACAGTACAGCAAACACAGAGAATACAGAGAAAATGGCGCTATGGAAAATAAAACAAGAGGAATTAGTGGCAACTATCAGTGATATCAAACACTGGTTAAATAAAGCATTGTGGAAGTTCTTGATGCTCAACATCCCTTCAGAAGATGTCTATGCTAAGTAAATCTGTGTGAATTGATCCTGAATGTTATTTTATTAACTGAACATGAGTTTGTTCAGCAAAGCAAGCTTCCATCAGCCATTTCTTTTCAGTCTTCTTATCAACATGATAAACACATCAAGACATCTTTGCTTGGCTTCCTCTCACGTGATTTGTGGATTTGAAAAACAAATCTGATTGGCACTTTTTCTGTAAATCCCCAGAAACACTGTTTTACCTTTAAAACACACCTATATACATCATTTCCAGCCTGTCTAACAGATTAAATGATCATAGTCTCAGTCCGTCTGTGTAAAAAGTGGTTTAATCAGACACCATGAGCTCTAAGCAAAAGAGTAGATGGCCACAGGAGACGTGGGCTCAGAGCTGTCATGGTACGGGCTCCTGTCGATATTCCTCTTACTGACACCAGTGTACTCTCCGATGAAGGAGCCATCCTCGTTAAACTCGATCTCTTCCCCCTCACCGTACTCCATGAGGCTGTCGTCACTGTTCGTTCTCCTGCCAATGTGCTCGATCGCACCCTGACTGCGCCCCTGTCGACTTTCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18331 True 770 lncRNA 0.41 1 4988569 4989338

Neighbor

gene id symbol gene type direction distance location
CI01000001_04944573_04950116 TFIP11 coding downstream 38453 4944485 ~ 4950116 (-)
CI01000001_04846242_04846925 BHLHE23 coding downstream 140869 4845807 ~ 4847700 (-)
CI01000001_04757377_04759421 DNAJC5, DNAJC5.L, DNAJC5AB, DNAJC5AA coding downstream 229062 4756419 ~ 4759507 (-)
CI01000001_04746153_04754209 NA coding downstream 234360 4746133 ~ 4754209 (-)
CI01000001_04732844_04744038 NA coding downstream 244531 4732844 ~ 4744038 (-)
CI01000001_05001068_05003302 NA coding upstream 11203 5000541 ~ 5003417 (-)
CI01000001_05003724_05017009 PM20D1.2, PM20D1 coding upstream 14317 5003655 ~ 5017009 (-)
CI01000001_05017930_05027838 NA coding upstream 28182 5017520 ~ 5027838 (-)
CI01000001_05062950_05065565 NA coding upstream 72959 5062297 ~ 5065565 (-)
CI01000001_05155976_05158742 NA coding upstream 166583 5155921 ~ 5158742 (-)
G16384 NA non-coding downstream 6251 4981978 ~ 4982318 (-)
G16383 NA non-coding downstream 8503 4979727 ~ 4980066 (-)
G16382 NA non-coding downstream 10894 4976552 ~ 4977675 (-)
G16380 NA non-coding downstream 15617 4972589 ~ 4972952 (-)
G16379 NA non-coding downstream 16328 4971313 ~ 4972241 (-)
G16388 NA non-coding upstream 62156 5051494 ~ 5054090 (-)
G16390 NA non-coding upstream 69352 5058690 ~ 5058927 (-)
G16400 NA non-coding upstream 89004 5078342 ~ 5078541 (-)
G16459 NA non-coding upstream 199943 5189281 ~ 5189642 (-)
G16461 NA non-coding upstream 243048 5232386 ~ 5251506 (-)
G16332 NA other downstream 30727 4950689 ~ 4957842 (-)
G15736 NA other downstream 187174 4800901 ~ 4801395 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other downstream 260362 4725927 ~ 4728210 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other downstream 510424 4468209 ~ 4523431 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 589054 4392314 ~ 4399804 (-)
G16462 NA other upstream 233439 5222777 ~ 5229585 (-)
G16664 NA other upstream 1354766 6344104 ~ 6347955 (-)
G16753 NA other upstream 1595142 6583054 ~ 6615589 (-)
G17789 NA other upstream 1848187 6837525 ~ 6890414 (-)
CI01000001_06932075_06937182 NA other upstream 1946739 6931621 ~ 6937231 (-)

Expression


Co-expression Network