RNA id: TU18331


Basic Information

Item Value
RNA id TU18331
length 770
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G16381
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4988569 ~ 4989338 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCTGAGGGTTAGATTGTATTTCGTGTGAGAATAAATGGTTTGTAGTCCATTAATTTGATCTACAGTACAGCAAACACAGAGAATACAGAGAAAATGGCGCTATGGAAAATAAAACAAGAGGAATTAGTGGCAACTATCAGTGATATCAAACACTGGTTAAATAAAGCATTGTGGAAGTTCTTGATGCTCAACATCCCTTCAGAAGATGTCTATGCTAAGTAAATCTGTGTGAATTGATCCTGAATGTTATTTTATTAACTGAACATGAGTTTGTTCAGCAAAGCAAGCTTCCATCAGCCATTTCTTTTCAGTCTTCTTATCAACATGATAAACACATCAAGACATCTTTGCTTGGCTTCCTCTCACGTGATTTGTGGATTTGAAAAACAAATCTGATTGGCACTTTTTCTGTAAATCCCCAGAAACACTGTTTTACCTTTAAAACACACCTATATACATCATTTCCAGCCTGTCTAACAGATTAAATGATCATAGTCTCAGTCCGTCTGTGTAAAAAGTGGTTTAATCAGACACCATGAGCTCTAAGCAAAAGAGTAGATGGCCACAGGAGACGTGGGCTCAGAGCTGTCATGGTACGGGCTCCTGTCGATATTCCTCTTACTGACACCAGTGTACTCTCCGATGAAGGAGCCATCCTCGTTAAACTCGATCTCTTCCCCCTCACCGTACTCCATGAGGCTGTCGTCACTGTTCGTTCTCCTGCCAATGTGCTCGATCGCACCCTGACTGCGCCCCTGTCGACTTTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18334 lncRNA downstream 6251 4981978 ~ 4982318 (-) True G16384
TU18333 lncRNA downstream 8503 4979727 ~ 4980066 (-) True G16383
TU18332 lncRNA downstream 10894 4976552 ~ 4977675 (-) True G16382
TU18330 lncRNA downstream 15617 4972589 ~ 4972952 (-) True G16380
TU18327 lncRNA downstream 16328 4971692 ~ 4972241 (-) True G16379
TU18338 lncRNA upstream 62156 5051494 ~ 5054090 (-) True G16388
TU18340 lncRNA upstream 69352 5058690 ~ 5058927 (-) True G16390
TU18352 lncRNA upstream 89004 5078342 ~ 5078541 (-) True G16400
TU18436 lncRNA upstream 199943 5189281 ~ 5189642 (-) True G16459
TU18439 lncRNA upstream 243048 5232386 ~ 5251506 (-) True G16461
CI01000001_04944573_04950116.mRNA mRNA downstream 38453 4944485 ~ 4950116 (-) True CI01000001_04944573_04950116
CI01000001_04846242_04846925.mRNA mRNA downstream 140869 4845807 ~ 4847700 (-) True CI01000001_04846242_04846925
CI01000001_04757377_04759421.mRNA mRNA downstream 229062 4756419 ~ 4759507 (-) True CI01000001_04757377_04759421
CI01000001_04746153_04754209.mRNA mRNA downstream 234360 4746133 ~ 4754209 (-) True CI01000001_04746153_04754209
CI01000001_04732844_04744038.mRNA mRNA downstream 244531 4732844 ~ 4744038 (-) True CI01000001_04732844_04744038
CI01000001_05001068_05003302.mRNA mRNA upstream 11203 5000541 ~ 5003417 (-) True CI01000001_05001068_05003302
CI01000001_05003724_05017009.mRNA mRNA upstream 14317 5003655 ~ 5017009 (-) True CI01000001_05003724_05017009
CI01000001_05017930_05027838.mRNA mRNA upstream 28182 5017520 ~ 5027838 (-) True CI01000001_05017930_05027838
CI01000001_05062950_05065565.mRNA mRNA upstream 72959 5062297 ~ 5065565 (-) True CI01000001_05062950_05065565
CI01000001_05155976_05158742.mRNA mRNA upstream 166583 5155921 ~ 5158742 (-) True CI01000001_05155976_05158742
TU18272 other downstream 30727 4950689 ~ 4957842 (-) True G16332
TU17581 other downstream 187174 4800901 ~ 4801395 (-) True G15736
TU17472 other downstream 260362 4569477 ~ 4618357 (-) False G15639
TU18440 other upstream 233439 5222777 ~ 5229585 (-) True G16462
TU18669 other upstream 1354766 6344104 ~ 6347955 (-) True G16664
TU18776 other upstream 1595142 6584480 ~ 6615589 (-) False G16753
TU19958 other upstream 1848187 6837525 ~ 6890414 (-) False G17789
TU19985 other upstream 1946739 6936077 ~ 6937223 (-) True CI01000001_06932075_06937182

Expression Profile