RNA id: TU18338


Basic Information

Item Value
RNA id TU18338
length 466
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G16388
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5051494 ~ 5054090 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAAAGCAAAAACCACGGAGATGATGAGGGAGGAGAGGAAGAGAGCGATGAGAGCACCAAACAACGTTTTTGTGAAAACTCCTCCAGTCGAGCTGCCGATGAGCAGGCAGAGCTGCTGGGAGAAGAACACCCAGGTGATCTCCTGTAACGTGGAGCCAGTCTGGCATTTCAGATCTAGGATCGTAGGCCCCAGAAAGGCTATGCTCAGTCCAAAGCTAAAGAACACACTCCAGTATGTCAGTGTATGTTGACAGTTCCTACGGAAAAGTGTTAATATACGCTCCTCAATTAACATAGCGTGAAAATCTCCAATCTATTCCACTGATATACTTCCTTGAGTCCTGGTGTCTGGATGTTTCTTTCAGTGGGTTTCAAATCATTTGCTTAGGTGACAGATGTCAGAATTGATGATCATTTCCCACATTTATATTCCTTCACTCCTCCCATTTCATGAACCTTTGTGCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18331 lncRNA downstream 62156 4988569 ~ 4989338 (-) True G16381
TU18334 lncRNA downstream 69176 4981978 ~ 4982318 (-) True G16384
TU18333 lncRNA downstream 71428 4979727 ~ 4980066 (-) True G16383
TU18332 lncRNA downstream 73819 4976552 ~ 4977675 (-) True G16382
TU18330 lncRNA downstream 78542 4972589 ~ 4972952 (-) True G16380
TU18340 lncRNA upstream 4600 5058690 ~ 5058927 (-) True G16390
TU18352 lncRNA upstream 24252 5078342 ~ 5078541 (-) True G16400
TU18436 lncRNA upstream 135191 5189281 ~ 5189642 (-) True G16459
TU18439 lncRNA upstream 178296 5232386 ~ 5251506 (-) True G16461
TU18479 lncRNA upstream 296578 5350668 ~ 5350915 (-) True G16497
CI01000001_05017930_05027838.mRNA mRNA downstream 23656 5017520 ~ 5027838 (-) True CI01000001_05017930_05027838
CI01000001_05003724_05017009.mRNA mRNA downstream 34485 5003655 ~ 5017009 (-) True CI01000001_05003724_05017009
CI01000001_05001068_05003302.mRNA mRNA downstream 48077 5000541 ~ 5003417 (-) True CI01000001_05001068_05003302
CI01000001_04944573_04950116.mRNA mRNA downstream 101378 4944485 ~ 4950116 (-) True CI01000001_04944573_04950116
CI01000001_04846242_04846925.mRNA mRNA downstream 203794 4845807 ~ 4847700 (-) True CI01000001_04846242_04846925
CI01000001_05062950_05065565.mRNA mRNA upstream 8207 5062297 ~ 5065565 (-) True CI01000001_05062950_05065565
CI01000001_05155976_05158742.mRNA mRNA upstream 101831 5155921 ~ 5158742 (-) True CI01000001_05155976_05158742
CI01000001_05191382_05196348.mRNA mRNA upstream 136969 5191059 ~ 5196348 (-) True CI01000001_05191382_05196348
CI01000001_05205733_05220435.mRNA mRNA upstream 150486 5204576 ~ 5221615 (-) True CI01000001_05205733_05220435
CI01000001_05288832_05293421.mRNA mRNA upstream 232666 5286756 ~ 5293421 (-) True CI01000001_05288832_05293421
TU18272 other downstream 93652 4950689 ~ 4957842 (-) True G16332
TU17581 other downstream 250099 4800901 ~ 4801395 (-) True G15736
TU17472 other downstream 323287 4569477 ~ 4618357 (-) False G15639
TU18440 other upstream 168687 5222777 ~ 5229585 (-) True G16462
TU18669 other upstream 1290014 6344104 ~ 6347955 (-) True G16664
TU18776 other upstream 1530390 6584480 ~ 6615589 (-) False G16753
TU19958 other upstream 1783435 6837525 ~ 6890414 (-) False G17789
TU19985 other upstream 1881987 6936077 ~ 6937223 (-) True CI01000001_06932075_06937182

Expression Profile