RNA id: TU18479


Basic Information

Item Value
RNA id TU18479
length 248
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G16497
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5350668 ~ 5350915 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTTATGTGGGCACCATTTCCTGTGAGGTGCGAACTTATTGAAAAACTCGTTGTACCCTGCTCTTATCGTATGCATAACAATAATGGAGCTAATGAGCTACATAAATATTTGCACATCCAGTGAATATTAGATCTGACAGATAAGTCATTAGCACATGACATCGCGCGCGTGGTGTTGGTAGAATAGAATGATAAACGACGACGTTTTAAAAAGTTTAACTTCGACGCGGCGTAAAGGTCAACGGTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18439 lncRNA downstream 99162 5232386 ~ 5251506 (-) True G16461
TU18436 lncRNA downstream 161026 5189281 ~ 5189642 (-) True G16459
TU18352 lncRNA downstream 272127 5078342 ~ 5078541 (-) True G16400
TU18340 lncRNA downstream 291741 5058690 ~ 5058927 (-) True G16390
TU18338 lncRNA downstream 296578 5051494 ~ 5054090 (-) True G16388
TU18491 lncRNA upstream 63335 5414250 ~ 5414495 (-) True G16509
TU18494 lncRNA upstream 68026 5418941 ~ 5419396 (-) True G16512
TU18496 lncRNA upstream 108877 5459792 ~ 5460018 (-) True G16514
TU18497 lncRNA upstream 111091 5462006 ~ 5462271 (-) True G16515
TU18500 lncRNA upstream 117203 5468118 ~ 5468464 (-) True G16518
CI01000001_05318747_05341451.mRNA mRNA downstream 8895 5317514 ~ 5341773 (-) True CI01000001_05318747_05341451
CI01000001_05313109_05313728.mRNA mRNA downstream 36940 5313056 ~ 5313728 (-) True CI01000001_05313109_05313728
CI01000001_05295894_05308912.mRNA mRNA downstream 41682 5295523 ~ 5308986 (-) True CI01000001_05295894_05308912
CI01000001_05288832_05293421.mRNA mRNA downstream 57247 5286756 ~ 5293421 (-) True CI01000001_05288832_05293421
CI01000001_05205733_05220435.mRNA mRNA downstream 129053 5204576 ~ 5221615 (-) True CI01000001_05205733_05220435
CI01000001_05355269_05356224.mRNA mRNA upstream 3796 5354711 ~ 5357715 (-) True CI01000001_05355269_05356224
CI01000001_05387081_05398706.mRNA mRNA upstream 35512 5386427 ~ 5398706 (-) True CI01000001_05387081_05398706
CI01000001_05403970_05409286.mRNA mRNA upstream 53055 5403970 ~ 5409286 (-) True CI01000001_05403970_05409286
CI01000001_05436238_05437581.mRNA mRNA upstream 84890 5435805 ~ 5437655 (-) True CI01000001_05436238_05437581
CI01000001_05437862_05438101.mRNA mRNA upstream 86788 5437703 ~ 5438101 (-) True CI01000001_05437862_05438101
TU18440 other downstream 121083 5222777 ~ 5229585 (-) True G16462
TU18272 other downstream 392826 4950689 ~ 4957842 (-) True G16332
TU17581 other downstream 549273 4800901 ~ 4801395 (-) True G15736
TU17476 other downstream 622461 4614175 ~ 4618357 (-) True G15639
TU18669 other upstream 993189 6344104 ~ 6347955 (-) True G16664
TU18776 other upstream 1233565 6584480 ~ 6615589 (-) False G16753
TU19958 other upstream 1486610 6837525 ~ 6890414 (-) False G17789
TU19985 other upstream 1585162 6936077 ~ 6937223 (-) True CI01000001_06932075_06937182
TU20141 other upstream 1900396 7251311 ~ 7253254 (-) False G17911

Expression Profile