RNA id: CI01000001_05437862_05438101.mRNA


Basic Information

Item Value
RNA id CI01000001_05437862_05438101.mRNA
length 399
RNA type mRNA
GC content 0.46
exon number 1
gene id CI01000001_05437862_05438101
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5437703 ~ 5438101 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAAGAGTGCAGGATTTCAAGAAAAAGAGTTTCAGGTTTTCAAGGAGTGTTTTACAAGTCTGAGACATCTGGAGATTGAAAGGAAAGGACTGAGCCACCGTTTCACCAGAACTATTCTGATAACATTTCAGCTGCGAAGAGCTCACTTCAGGATCTGCCCCGTCCTGGTGGGTCACTCAGCCGGACTGATGTGGAATGCGACCCTTTATGACCCCATCCCATGGGCCTCTATTCAATGAGCCGGACTCGGGAGAGAGCAGATAATAGAGGCAAGAGGCCGGCACACAAAAAAGAGTGAAATAATAACAGCAGCAGGAGTGTTCAGACTGGTAAGAGAGTTAAAGGGGTCCTTGAAGGTGGGGAAAAAAGAGCTTAAAATACAAAGGAGAAGGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18494 lncRNA downstream 18307 5418941 ~ 5419396 (-) True G16512
TU18491 lncRNA downstream 23208 5414250 ~ 5414495 (-) True G16509
TU18479 lncRNA downstream 86788 5350668 ~ 5350915 (-) True G16497
TU18439 lncRNA downstream 186197 5232386 ~ 5251506 (-) True G16461
TU18436 lncRNA downstream 248061 5189281 ~ 5189642 (-) True G16459
TU18496 lncRNA upstream 21691 5459792 ~ 5460018 (-) True G16514
TU18497 lncRNA upstream 23905 5462006 ~ 5462271 (-) True G16515
TU18500 lncRNA upstream 30017 5468118 ~ 5468464 (-) True G16518
TU18506 lncRNA upstream 134482 5572583 ~ 5573003 (-) True G16524
TU18515 lncRNA upstream 148978 5587079 ~ 5587354 (-) True G16531
CI01000001_05436238_05437581.mRNA mRNA downstream 48 5435805 ~ 5437655 (-) True CI01000001_05436238_05437581
CI01000001_05403970_05409286.mRNA mRNA downstream 28417 5403970 ~ 5409286 (-) True CI01000001_05403970_05409286
CI01000001_05387081_05398706.mRNA mRNA downstream 38997 5386427 ~ 5398706 (-) True CI01000001_05387081_05398706
CI01000001_05355269_05356224.mRNA mRNA downstream 79988 5354711 ~ 5357715 (-) True CI01000001_05355269_05356224
CI01000001_05318747_05341451.mRNA mRNA downstream 95930 5317514 ~ 5341773 (-) True CI01000001_05318747_05341451
CI01000001_05483661_05484398.mRNA mRNA upstream 44986 5483087 ~ 5484725 (-) True CI01000001_05483661_05484398
CI01000001_05502863_05504638.mRNA mRNA upstream 63169 5501270 ~ 5505052 (-) True CI01000001_05502863_05504638
CI01000001_05509301_05539080.mRNA mRNA upstream 69875 5507976 ~ 5540558 (-) True CI01000001_05509301_05539080
CI01000001_05544032_05558747.mRNA mRNA upstream 105313 5543414 ~ 5558747 (-) True CI01000001_05544032_05558747
CI01000001_05575469_05577709.mRNA mRNA upstream 136829 5574930 ~ 5577709 (-) True CI01000001_05575469_05577709
TU18440 other downstream 208118 5222777 ~ 5229585 (-) True G16462
TU18272 other downstream 479861 4950689 ~ 4957842 (-) True G16332
TU17581 other downstream 636308 4800901 ~ 4801395 (-) True G15736
TU17476 other downstream 709496 4614175 ~ 4618357 (-) True G15639
TU18669 other upstream 906003 6344104 ~ 6347955 (-) True G16664
TU18776 other upstream 1146379 6584480 ~ 6615589 (-) False G16753
TU19958 other upstream 1399424 6837525 ~ 6890414 (-) False G17789
TU19985 other upstream 1497976 6936077 ~ 6937223 (-) True CI01000001_06932075_06937182
TU20141 other upstream 1813210 7251311 ~ 7253254 (-) False G17911

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043970 True 589 processed_transcript 0.46 2 NC_007134.7 18870817 ~ 18898522 (-)