CI01000001_05509301_05539080 (ARFGEF2)


Basic Information

Item Value
gene id CI01000001_05509301_05539080
gene name ARFGEF2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5507976 ~ 5540558 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_05509301_05539080.mRNA
AACATCTGTATTCAGTTGAATAATAAAATGATATTCTTCTTTACACCATTACTTAGAGGTTCTTCTTTATTGTGATTTGTCTGATATGGCAAATGTATTTGTACTCTTTTCTGGGACACTTCGCTCAGGAGCATTCCAATTTCATTTGTAGATGTTACTACACTTCTAGTGGAATTAACCTGTGTGGCAAATTCAATTGAATGAGTATGATTTGGAAAAGCACACAGCTCTCAATAAAAGGTCTAACAGCTGAAAATGCATATCAGAGTGAAAATCAAGCCATGAGATCAAAAGAACTGCCTGTAGAGCTCAGAGACAGGATTGTGTCAAGATAGATCTGGGAAAAAAACTACAAAAAACAAACAAACACCTAAAGGACTCTCTCAGACTGTAAGAAACAAGATTCTCTGGTCTGATGAACCTCAGTTCCAAGCATCATGTATGGAGGAAACCAGGCACTGCTCATCACCTGCACAAAACCATCCCAAGAGTAAAGTGTGGTGGTAGCAGCATCATGCTGTGGGGGTGCTCTTCGTCGGCAGGGACTGGGGGACTCATCAGGGTAAAAGGAAAGCTTAACGCAGCAAAATATAGAGATAGCCTTAATGAAAACCTAGTTCAGAGCATTCAGAATCTCTGACAGGGCAAAAGGTTCACCTTCCAACAGGACAATGCAAGAGTGGTTTATGGACAACTCTGAATGTCCTTGAGAGGCCCAGCCAGAGCCTGGGCTTGAACCCAATCAAACATCTCTGGAAGAAACGTGAAAATGTCTGTCCACCAAATGTCGGTCCCCATCCAACCTGACAGAGCTTGAGAGGATCTGAGGAGAAAAATGGCAGAAAATCACCAAATGCAGATATATAAAGCTTGTCGCATCATTCTCAAAAAGACTTGAGGCTGTAAAGGTGTTTCAACAAAGTACGGAGTTAAGGGTACAAATACTTATGCAATGTATTTCAGTTTTTCTTTATTAACACATTTGCAAACAAATCTGTGTTTTGCTTTGTCATTATGGTGTATGGAGTGTTGTATGTATATACACAATGCATTGTGAAAGTAATCGTACCCCTTTCATTTTAGAGACTATTTTGAGGGATTACTTCAATAAATTATTGGTGATCACACTGTGGAACACTAAAGTCCTAAAATGTCCACTGCATTTTTTCTTTTTTTGGTTAGTACCCCCATACTAACTACCTGAAACCAAACTGCCTACCAAACACATGCTCCATTCATTTCCACCTCAGCCAAACCACTGAATGTACACATCAGTGTAAGCGCCTGCGTGTCACGTGACGTGACGTGCGGCCAACATGGCGACGCAGTGCTGAGATAGTAGCAGCAGCGTCCAACTGGCCCCGACTGAACCAGCGACAACATCGGCCCATTCCTGGCACCCTCACGCCCCTGCCAAACCGCAGGGATCGGGCCAGCGATGACGGCCTAACGGACTACTTTAACACGTCGAACGAGAGATGAAAGAACAGGAAGCGCTGGAAATCCATCGACGGCATACGCAGACAGAAAGCCTGAGCACCAAGAGCATGTTTCTGTCTCGAGCGCTGGAGAAAATCCTCGCGGATAAGGAGGTGAAGCGGAGCCAGCACAACCAGCTGCGCAAGGCTTGTCAAGTGGCATTAGATGAAATTAAGCATGAACTGGAAAAGCAGAAGGACGGTACTGTTGTTCCTCCAAGAGCTAACTACATTGAGGCTGACAAGTACGTCTTGCCTTTCGAGCTGGCATGTCAGTCCAAGTCCCCACGTATTGTCAGTACGTCTCTCGACTGCCTACAGAAACTCATTGCGTATGGGCACATCACGGGAAACGCCCCTGACAGCGGAGCTCCAGGAAAACGGCTGATTGACAGGCTGCTGGAGACCATCTGTAACTGCTTTCAGGGACCCCAGACTGACGAGGGGGTACAACTACAGATTATTAAGGCTCTGCTGACTGCCGTGACATCACCACACATAGAGATCCATGAGGGAACGATTCTCCTTACAGTGCGCACCTGCTACAACATCTACCTTGCTAGTCGCAACCTAATCAACCAGACTACAGCCAAGGCCACTCTAACACAGATGCTCAATGTCATCTTCACCCGTATGGAGAACCAGGCGGCTCTGGAAGCTCAGGAAGCGGAGAAGGACAGACAACGTCTGCAGCTGCGCAATCCTTCCCCAGTGTCCAGTAACCCTTCACCTGTGACGCAAAACCCTTCTCCAACTCCTGGTCGGGGGTCCGGATCTCCATGGCTTGGACGAGCCCTCTTAGAACAGAACGGACCACCATCCCCCTCTCTCAGCCCGCCTGGGATCCCATCCACTCCTTCTACCCCCCAAGACTCATCCTCCATCAATGGCCAGCAAGAGGAGTCAAAGTCAGAGGAGGAGTTTGCCACTAATCAACAGAGCACAAAGGAAATTGAACACGCAGACAAAGAGATTCAGGAGTCAGACCAAACAACTGCCGATCCATCAGAAGGAGAGGAGGCCCATCCGCAGCCTGAAACAGAAGCAAGCCCTGAGGTTCTGGAAGAGACTGAGCCGGACAGCGGATTAGGAGATAGCTCTGTGGAAGGAGGATTAGATCAACATTCTGACTCCGAAACCAAAGTGCCGCCTCCTGTTGTCCGAGTAGACATGCAGCAGATGAACGGAATGGTGGACGACCGTGGCTCAGAGTCCTCGACAGACATTCTGAAAGATGCCTTCCTCGTGTTCCGCTCCCTCTGCAAGCTGTCAATGAAGCCCCTGGCTGATGGACCACCTGACCCAAAGTCCCATGAGTTGCGCTCTAAGGTAGTTTCCCTGCAGCTGTTGCTCTCAGTGTTGCAGGGTGCTGGACCTGTGTTTCGAACCCATGAGATGTTTGTGAACGCCATAAAACAGTACCTGTGTGTGGCGCTCTCTAAAAACGGGGTCTCCTCTGTGCCTGAAGTATTTGAACTGTCTCTTGCCATCTTCCTTACCCTGCTCTCCCACTTCAAAGTGCACCTTAAGATGCAGATCGAGGTGTTCTTCAGGGAGATCTTTCTAACAATCCTGGAGACGTCATCCAGCTCCTTTGAGCATAAGTGGATGGTCATTCAGACTCTAACACGGATATGTGCAGATGCACAATGTGTGGTGGACATTTATGTGAACTATGACTGTGATCTCAACGCTGCCAACATTTTTGAGCGGCTGGTAAATGACCTGTCTAAAATCGCCCAGGGAAGGAGTGGACAGGAGCTCGGCATGACTCCATTACAGGAGCTGAGTTTGAGAAAGAAAGGGCTGGAGTGTCTGGTGTCCATTTTGAAGTGCATGGTGGAATGGAGCAGAGACATGTACGTCAACCCCAACCTGCAGGCCAACCTTGGTCAGGAACGTCCAGCAGAGGGCGACAGTTCGCATCTCCCTGAGCATCTTTCCTCTCGCAGAGATAGTGTGAGCTCTTTGGACTCCACCGTGTCTTCTGGAGTTCAGCAGTCTCAGCCAGATCACCCTGAGCAGTATGAGGTCATCAAGCAGCAGAAAGAGATCATCGAGCATGGCATTGAGCTGTTCAACAAGAAACCAAAAAGGGGATTGCAATACCTGCAGGAGCAAGGCATGCTGGGAACCTCACCAGAAGACATTGCACAGTTCCTGCAACAAGAGGAGCGATTGGACACTACTCAGGTTGGCGAGTTCCTGGGAGAGAATGTGAAGTTTAATAAGGAGGTGATGTACTGCTACGTGGACCGGTTGGACTTCTGTGGAAAAGACTTTGTGTCAGCACTCCGTGCCTTCTTGGAAGGTTTCAGACTTCCAGGTGAAGCCCAGAAGATTGATAGGCTCATGGAGAAGTTTGCCGCCCGCTACCTGGAGTGCAATCAGGGGCAGACTCTGTTTGCCAGTGCAGACACAGCTTACGTTCTGGCCTACTCCATCATCATGTTAACCACCGACCTGCACAGTCCACAGGTAAAGAACAAGATGACGAAGGAGCAGTACATAAAAATGAACCGCGGCATTAATGACAGTAAGGACCTGCCCGAAGAGTATCTCTCCTCCATCTACGATGAAATTGCAGGCAAGAAGATTGCCATGAAGGAGAGCAAAGAATACTCCATCACTCCCAAATCCAGCAAACAGAATGTAGCCAGTGAGAAGCAGAGAAGGCTGCTGTATAACATGGAGATGGAGCAGATGGCCAAAACGGCTAAAGCTCTGATGGAGGCTGTAAGTCACGCTCAGGCTCCCTTCTTCAGTGCCACTCACCTAGAGCACGTCCGGCCCATGTTCAAGCTGGCCTGGACTCCCCTGCTGGCGGCGTTCAGTGTAGGACTCCAGGATTGTGACGATCAGGATGTGGCATCTCTTTGTCTGGAGGGAATTCGTTGTGCTATCAGGATCGCCTGCATCTTCAACATGCAGTTGGAGAGAGATGCCTATATCCAGGCCTTGGCCCGGTTTACGCTGCTCACAGCCAGTTCAAGTATCACAGAGATGAAACAGAAGAACATTGACACAATTAAGACACTTATCATGGTCGCCCACACCGATGGAAACTACTTGGGCAACTCCTGGCATGAGATTCTGCGGTGTATCAGTCAGCTGGAGTTGGCTCAGTTGATTGGAACAGGGGTGAAGACGCGTTATATATCCGGTGTGGTCCGGGACCAGGGAGGCAGCATAAAGGGCTTCCCATCAGGTGGAGAGGAATTCATGCCCCTCGGTTTAGGTACTTTGGTTGGAGGTCCAGACAAGCGTCAGATGGCTCATATCCAGGAGTCAGTGGGGGAGACCAGCTCTCAGAGTGTTGTGGTGGCTGTGGACAGAATCTTCACTGGATCCACCAGGCTTGATGGAAATGCAATTGTTGACTTTGTGCGTTGGCTATGTGCGGTGTCCATGGACGAGCTGGCCTCTGCGCACCAGCCGCGCATGTTCAGTCTGCAGAAGATAGTGGAGATCTCCTACTACAACATGAACCGCATCCGTTTGCAGTGGTCACGCATTTGGCAGGTCATCGGAGATCACTTCAACAAGGTGGGTTGTAATCCTAATGAAGATGTGGCCATCTTTGCAGTGGACTCCCTGAGACAACTTTCAATGAAGTTTCTAGAGAAAGGAGAACTGGCCAATTTCCGCTTCCAAAAGGACTTTTTAAGGCCATTTGAACACATCATGAAGAAGAACAGGTCGCCCACTATCCGGGACATGGTGATACGTTGTGTGGCCCAGATGGTGAACTCCCAGGCTACTAATATTCGCTCTGGCTGGAAGAACATCTTCTCTGTGTTCCATCAAGCAGCATCAGATCATGATGAGAACATTGTGGACCTTGCATTTCAGACCACAGGACACATTGTTATGACAACATTTCAGCAGCATTTTGCGGCGGCCATTGACTCTTTCCAGGATGCAGTAAAGTGTTTGTCGGAGTTTGTGTGTAATGCTGCATTTCCTGACACCAGTATGGAAGCCATACGGCTTATCCGCCACTGCGCTAAATATGTGTCTGACAGGCCGCAGGCACTGAGGGAATACACTAGTGACGATATGAACGTGGCCCCTGGTGACCGTGTTTGGGTGCGAGGCTGGTTCCCCATCCTGTTTGAGCTTTCCTGCATCATCAACCGCTGCAAACTAGACGTCAGGACCAGGGGTCTGACTGTCATGTTTGAGATCATGAAGAGTTACGGACACACATTTGAGAAGCACTGGTGGCATGACCTCTTTCGGATCATCTTTCGAATATTCGACAACATGAAGCTCCCTGAGCAGCAAACTGAAAAAACTGAGTGGATGACGACAACATGTAACCATGCCCTCTATGCTATCTGTGACGTGTTCACACAATTTTACGAGCCTCTCAGCGAGGTGCTGTTGGCGGATATTTTTGCACAGCTGCAGTGGTGTGTAAAACAAGATAATGAGCAGCTGGCGCGGTCAGGCACAAACTGTCTTGAGAACCTGGTGATCCTTAACGGGGAGAAGTTCAGTCCGGAGGTGTGGGACGTCACCTGCGCCTGCATGCTGGATATCTTCCAGACCACCAGCCCTCATGCCTTGCTGACATGGCGACCAGCTGGACAGGAAGAGGAGGTGGGAGAAGGGAAACACATGGATGTTGAGGTGGATTCTCTGTCACAGAGCAGCTTTGAGAGGACTCTGTCAGAGAGAGGCCATAGTCAAATGTCCACCGCCAGTGATGAAACCTGGAAAGGAAGGTCCCACACCAGAGTCTCGGACCACAGGCTGTTTGCAGGGCTGCTTATAAAGTGCGTCGTACAGCTGGAGTTGATTCAGACCATAGACAACATTGTATTCTACCCAGCTACCAGCAAGAGGGAGGATGCTGAGAATATGGCTGCTGCTCAGCGAGATGCACTTGAGCAGGCAGAAGAGGGAGAGACGGAGCCCGATCAGGGCATGTACAGACACCTGTCGTCACAGCACCTCTTCAAACTGCTTGACTGCCTCCTTGAGTCCCACAGGTTTGCCAAGGACTTTAACTCCAACAATGAGCAGAGGACAGCGCTCTGGAGAGCAGGTTTTAAGGGGAAGTCAAAACCGAATCTTCTAAAGCAGGAGACCAGCAGTCTGGCTTGCAGTCTGAGGATCCTCTTTCGCATGTACTCCGACACGCAGCTGCAAGACTCCTGGCCAGACATCCAGACACGCCTTTTGCAAGTGTGTAGTGAAGCCCTGGCTTACTTCATCAGTCTTACCTCAGAGAGCCACCGGGAAGCCTGGACGAGCCTCCTGCTGCTGCTCCTCACCCGGACACTCAGACTGCCTGATGACAAATTCAAGCCTCATGCCTCCTGCTACTACCACCATCTGTGTGAGATGATGCAGTTCGACCTCATTCCGGAGCTTCGTGCTGCTTTGCGGCGATTTTTCCTCCGCATCGGTTCCGTCTTCCACATCGCCGCTCCCGAATTGGGCCTAGCGCAGCCTTCATCGTCATAAAGTAGATCAGAACTGAAAAACACAGCTCTGAGATGAACTAAGAAAAAGGCGGGGCTGTAAAGTGGATGGATGGTCAGAGCGCATAAGCCTCTCCTGTACAGGAACACAGAATGACTGCGTGTGACTGTCCAGTTCTTTTCTCTGCCAGTCCTGACTCATCAGCCGTCGGTCGCTCCCCTATGAGAGAACAGCAGGGTGACGCTTCTGCTGTGTCATCCGTCTGTGTTGTTAGACTCATATTTGTTTATTTTTATTTTGACTTTTCTTCTGGATGGCTGCGACAATAATTTATTACCAGTACTGCTGTATATCTGGTTTCTGATCGTCTGTTGATTTCATTTTGTTGGCTTTTGTCCTATCTGTTAAATTTTTGTCTGTTTTAAAGGCTGAACAAATATAGAAATGTCAAAAACATACAAACACAAGATCTTCCCCTGTTATTAAGAGCTTGTAAGTGACACCCAGTGTGCAATGAGCTTGTGCCAGTGGTATATTTGTTACTGATTGGTCCAAAAAAGCCCATTATCATTGTCCTTTATTGATTCATCATACAATTAATCGATCATCTCTGATTCAAATTCAGTCAAGCAACCCCACAGAGGTTTTTGCATTTAAAATGCTTTTAGTTTGGGGTAAAAGACTTGAATTTGGTTTTGGTGTGTTTACACTAAAACTCAAATTGTACTAAGAATGTAATGGTTGCTTTTAAAGCATTTGGTGTTTATTTTACATGTGTCGGAACTCACGCTTGTTAATCCAGAGCAGGCAGACACTACCATTCCTTACATGCCACACACCATGCTCATTTGGTTTCCATCGTATTGATTTCAATCGTTTTTTGAGAGGTTTGTTAATTCTACATTCTGATTTTTGTTTGTTCATATTTATCATTGAAATCTTAAGACATCTAATGAATATTATTTTAGTGCACTAAAGTTGCTTAATTGATTTTTTTTTTTTTTTAATCTTTCATTTTTTGTGAGTGCTGTTCGCTCTTCATTCGGAGTCTGACTGAATTGGCAAGTTTACGCAATGGATGCCAGTCACTGATGTCATTATCAAAAAATGAGTGAAGGGGGAGAAATACAGGACCACAAATGTACTGTATTATCCAGGTATATCTTCATTAAACCCAAGCAGCATATGACTTAGTAGTGTATTACCAGTGTAGATTCAAATCCCAATTCATTTTCATTAAGGATGTATTTCATTCTTGAAGTGCATTTAAATATTTTCTGAAAAGCATTCCTTCCCTTGCAACTATGGATGTCTACTTTGCCTCCCTCTAAACTGGGAAATATAAATATATATAGTATATGAATAAA

Function

symbol description
arfgef2 Predicted to enable guanyl-nucleotide exchange factor activity. Acts upstream of or within with a positive effect on angioblast cell migration and cell migration involved in sprouting angiogenesis. Predicted to be located in Golgi apparatus and perinuclear region of cytoplasm. Is expressed in brain. Human ortholog(s) of this gene implicated in periventricular nodular heterotopia. Orthologous to human ARFGEF2 (ADP ribosylation factor guanine nucleotide exchange factor 2).

GO:

id name namespace
GO:0032012 regulation of ARF protein signal transduction biological_process

KEGG:

id description
K18442 ARFGEF, BIG; brefeldin A-inhibited guanine nucleotide-exchange protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_05509301_05539080.mRNA True 8278 mRNA 0.48 39 5507976 5540558

Neighbor

gene id symbol gene type direction distance location
CI01000001_05502863_05504638 BCL2L1 coding downstream 2924 5501270 ~ 5505052 (-)
CI01000001_05483661_05484398 NA coding downstream 23251 5483087 ~ 5484725 (-)
CI01000001_05437862_05438101 NA coding downstream 69875 5437703 ~ 5438101 (-)
CI01000001_05436238_05437581 FAM110A coding downstream 70321 5435805 ~ 5437655 (-)
CI01000001_05403970_05409286 NSFL1C coding downstream 98690 5403970 ~ 5409286 (-)
CI01000001_05544032_05558747 PARD6B coding upstream 2856 5543414 ~ 5558747 (-)
CI01000001_05575469_05577709 EBP coding upstream 34372 5574930 ~ 5577709 (-)
CI01000001_05594766_05595939 OARD1 coding upstream 54046 5594604 ~ 5595939 (-)
CI01000001_05599133_05600420 GUCA1B coding upstream 58219 5598777 ~ 5601740 (-)
CI01000001_05613623_05676716 KLHDC8B coding upstream 72260 5612818 ~ 5677447 (-)
G16518 NA non-coding downstream 39512 5468118 ~ 5468464 (-)
G16515 NA non-coding downstream 45705 5462006 ~ 5462271 (-)
G16514 NA non-coding downstream 47958 5459792 ~ 5460018 (-)
G16512 NA non-coding downstream 88580 5418941 ~ 5419396 (-)
G16509 NA non-coding downstream 93481 5414250 ~ 5414495 (-)
G16524 NA non-coding upstream 32025 5572583 ~ 5573003 (-)
G16531 NA non-coding upstream 46521 5587079 ~ 5587354 (-)
G16536 NA non-coding upstream 56905 5597463 ~ 5597803 (-)
G16537 NA non-coding upstream 61758 5602316 ~ 5602605 (-)
G16538 NA non-coding upstream 75101 5615659 ~ 5615930 (-)
G16462 NA other downstream 278391 5222777 ~ 5229585 (-)
G16332 NA other downstream 550134 4950689 ~ 4957842 (-)
G15736 NA other downstream 706581 4800901 ~ 4801395 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other downstream 779769 4725927 ~ 4728210 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other downstream 1029831 4468209 ~ 4523431 (-)
G16664 NA other upstream 803546 6344104 ~ 6347955 (-)
G16753 NA other upstream 1043922 6583054 ~ 6615589 (-)
G17789 NA other upstream 1296967 6837525 ~ 6890414 (-)
CI01000001_06932075_06937182 NA other upstream 1395519 6931621 ~ 6937231 (-)
G17911 NA other upstream 1710753 7251311 ~ 7267952 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022276 arfgef2 coding NC_007134.7 CM002907.2 18986015 ~ 19051869 (-)