G16518


Basic Information

Item Value
gene id G16518
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5468118 ~ 5468464 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU18500
GGTTGATTCAGCCTTGTAGGGAAATGCCTTCGCATGCCAAAATCTGCAAGAGCAGTACTTTAGTGATAATATATCATTCACTCTCTTGACGCCAACTCCTGGGAGGCCATAAATATGAGGGTGAACCTAACAAGCCCTGCCCTCAAAATATGGCCAAGGGTGGATGCCATTCATACTGTGCCAGCTTTGACCTAGACCTTCTTCTGCAAGTGTCCTGGTTTACTGAGCCACCTCTCACTGTTTCTTTCCTTCTTCCATTCACATCCAACCTACTTTGCATACTGGCACCATAAGACAGTCTTTTCCTTTCAGCCCTCCAGGGCATGCTGGGTAAATGGGTCATTCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18500 True 347 lncRNA 0.42 1 5468118 5468464

Neighbor

gene id symbol gene type direction distance location
CI01000001_05437862_05438101 NA coding downstream 30017 5437703 ~ 5438101 (-)
CI01000001_05436238_05437581 FAM110A coding downstream 30463 5435805 ~ 5437655 (-)
CI01000001_05403970_05409286 NSFL1C coding downstream 58832 5403970 ~ 5409286 (-)
CI01000001_05387081_05398706 TRPC4AP coding downstream 69412 5386427 ~ 5398706 (-)
CI01000001_05355269_05356224 NA coding downstream 110403 5354711 ~ 5357715 (-)
CI01000001_05483661_05484398 NA coding upstream 14623 5483087 ~ 5484725 (-)
CI01000001_05502863_05504638 BCL2L1 coding upstream 32806 5501270 ~ 5505052 (-)
CI01000001_05509301_05539080 ARFGEF2 coding upstream 39512 5507976 ~ 5540558 (-)
CI01000001_05544032_05558747 PARD6B coding upstream 74950 5543414 ~ 5558747 (-)
CI01000001_05575469_05577709 EBP coding upstream 106466 5574930 ~ 5577709 (-)
G16515 NA non-coding downstream 5847 5462006 ~ 5462271 (-)
G16514 NA non-coding downstream 8100 5459792 ~ 5460018 (-)
G16512 NA non-coding downstream 48722 5418941 ~ 5419396 (-)
G16509 NA non-coding downstream 53623 5414250 ~ 5414495 (-)
G16497 NA non-coding downstream 117203 5350668 ~ 5350915 (-)
G16524 NA non-coding upstream 104119 5572583 ~ 5573003 (-)
G16531 NA non-coding upstream 118615 5587079 ~ 5587354 (-)
G16536 NA non-coding upstream 128999 5597463 ~ 5597803 (-)
G16537 NA non-coding upstream 133852 5602316 ~ 5602605 (-)
G16538 NA non-coding upstream 147195 5615659 ~ 5615930 (-)
G16462 NA other downstream 238533 5222777 ~ 5229585 (-)
G16332 NA other downstream 510276 4950689 ~ 4957842 (-)
G15736 NA other downstream 666723 4800901 ~ 4801395 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other downstream 739911 4725927 ~ 4728210 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other downstream 989973 4468209 ~ 4523431 (-)
G16664 NA other upstream 875640 6344104 ~ 6347955 (-)
G16753 NA other upstream 1116016 6583054 ~ 6615589 (-)
G17789 NA other upstream 1369061 6837525 ~ 6890414 (-)
CI01000001_06932075_06937182 NA other upstream 1467613 6931621 ~ 6937231 (-)
G17911 NA other upstream 1782847 7251311 ~ 7267952 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022274 NA non-coding NC_007134.7 CM002907.2 18929913 ~ 18942050 (-)