CI01000001_05575469_05577709 (EBP)


Basic Information

Item Value
gene id CI01000001_05575469_05577709
gene name EBP
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5574930 ~ 5577709 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_05575469_05577709.mRNA
ATGCTGAAGGAAGCAGAAACTATAAATCATCCCTATTGGCCACGCAACCTGTCTATTCCCAACTATGTGGCTAATGACCGTTCAATGTCAGAGATTCTCATGTTCCTGTTCTCTGTGTCTGGGATACTGCTGCTTGCCACCTGGTCATTGACTGGGCGTAAAGTGTCTGGGAGCAGACTTAGTGGAGGGAGAAGGTTAGCTCTGTGCTGGTTCACTGTGTGTGGCTTCATCCACGGGGTCATTGAGGGATGGTTCTCTTTATACTACACTATCATTCCTGAAGACCAGAGCTTCCTTTCTCAACTGTGGAAAGAATATTCGAAAGGAGACAGCAGATATGCAATAGCGGATAATTTCACCGTTAGTATGGAGACAGTGACTGCGTGCCTGTGGGGTCCCTTCAGCATATGGATTGTTCTGGCCTTCCTGTATAATCGTCCTTATAGATTTGTCCTGCAGCTCATCGTATCTCTAGGTCAGCTGTATGGTGCAGTCCTCTACTTCTTCACTGAGCACAGAGATGGATATATTCACAGCGAATATGGTCATCCCATCTATTTCTGGTTCTACTTTGTGTTTATGAATACTTTGTGGATTGTCATCCCTCTCATTCTTATAGTGGACTCGTGGTATCAGCTATCTACCTGTCAATCCATGTTTGATAAAGCAGCACCAAAAGGGAAGTCTAAAAAAAACTAGATCAGTAGAAAATAGAAGGAATATGGAAAAGAAAAGAACCAAAATTCTGCACATAATTCTTGATAACATATACAATATGTTTAGACATATTTTAATAATGTAATTTTTATAATAAAACAGTGATTTGCTCATGGAAGAAAATGGAAAAAGCCTGAAGTGTAATCCGTGAGATCTTCATTACATTAATGAAAACGTGTTGATTAAATGCCCATAATACTGCTCCAGCAGGGTTGCGTCATATTTATCCCTGTTTTTATGGCACTGTTGCACTATATCGATTTTCTCTGCTCAGGATCTGCCTTTCTTTATGTTCTGTTGCTAATGAATAAGTAAATTGTTATTAATTGATAACATCTGAGATTTTGATCCAACATGATCCAATTCTGCTCATATCATTGTCACCTGGCTGGTCACTTTTCAAGAGCCACATACAATGAGAGTGGGAGCCTAAAATATGGAGCACAGCTTTTTATTACACAGCTTTTCTACAATAGACAATTTAATCTTCTTAGAATATGTGCATTTGTATTTAAAATAAA

Function

symbol description
ebp Predicted to enable C-8 sterol isomerase activity and steroid delta-isomerase activity. Predicted to be involved in cholesterol biosynthetic process. Predicted to act upstream of or within sterol metabolic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in MEND syndrome; X-linked chondrodysplasia punctata 2; and chondrodysplasia punctata. Orthologous to human EBP (EBP cholestenol delta-isomerase).

GO:

id name namespace
GO:0047750 cholestenol delta-isomerase activity molecular_function

KEGG:

id description
K01824 EBP; cholestenol Delta-isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_05575469_05577709.mRNA True 1238 mRNA 0.39 4 5574930 5577709

Neighbor

gene id symbol gene type direction distance location
CI01000001_05544032_05558747 PARD6B coding downstream 16183 5543414 ~ 5558747 (-)
CI01000001_05509301_05539080 ARFGEF2 coding downstream 34372 5507976 ~ 5540558 (-)
CI01000001_05502863_05504638 BCL2L1 coding downstream 69878 5501270 ~ 5505052 (-)
CI01000001_05483661_05484398 NA coding downstream 90205 5483087 ~ 5484725 (-)
CI01000001_05437862_05438101 NA coding downstream 136829 5437703 ~ 5438101 (-)
CI01000001_05594766_05595939 OARD1 coding upstream 16895 5594604 ~ 5595939 (-)
CI01000001_05599133_05600420 GUCA1B coding upstream 21068 5598777 ~ 5601740 (-)
CI01000001_05613623_05676716 KLHDC8B coding upstream 35109 5612818 ~ 5677447 (-)
CI01000001_05710029_05712242 NA coding upstream 132211 5709920 ~ 5712510 (-)
CI01000001_05738554_05751605 NA coding upstream 160418 5738127 ~ 5751605 (-)
G16524 NA non-coding downstream 1927 5572583 ~ 5573003 (-)
G16518 NA non-coding downstream 106466 5468118 ~ 5468464 (-)
G16515 NA non-coding downstream 112659 5462006 ~ 5462271 (-)
G16514 NA non-coding downstream 114912 5459792 ~ 5460018 (-)
G16512 NA non-coding downstream 155534 5418941 ~ 5419396 (-)
G16531 NA non-coding upstream 9370 5587079 ~ 5587354 (-)
G16536 NA non-coding upstream 19754 5597463 ~ 5597803 (-)
G16537 NA non-coding upstream 24607 5602316 ~ 5602605 (-)
G16538 NA non-coding upstream 37950 5615659 ~ 5615930 (-)
G16539 NA non-coding upstream 40048 5617757 ~ 5618044 (-)
G16462 NA other downstream 345345 5222777 ~ 5229585 (-)
G16332 NA other downstream 617088 4950689 ~ 4957842 (-)
G15736 NA other downstream 773535 4800901 ~ 4801395 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other downstream 846723 4725927 ~ 4728210 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other downstream 1096785 4468209 ~ 4523431 (-)
G16664 NA other upstream 766395 6344104 ~ 6347955 (-)
G16753 NA other upstream 1006771 6583054 ~ 6615589 (-)
G17789 NA other upstream 1259816 6837525 ~ 6890414 (-)
CI01000001_06932075_06937182 NA other upstream 1358368 6931621 ~ 6937231 (-)
G17911 NA other upstream 1673602 7251311 ~ 7267952 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location