RNA id: TCONS_00043970


Basic Information

Item Value
RNA id TCONS_00043970
length 589
RNA type processed_transcript
GC content 0.46
exon number 2
gene id XLOC_022272
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 18869217 ~ 18898522 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCTCTCGGGGTTCAGAAAGATGTAGGTACTCTCACTTTTCTTTCTCCAAGACGTTTCGCCGCTGAAAACTTTTATACGGTACATTACAATCAAGTTTCAATCCTTACCAGTTTCCGGACATCGCCGCAGTGTTATTGGGGAAAAGAGTCCAGGATTGCAAAAAAAGGCTCTGGTTTTTAAGGAGTGTTTTACAAGTTGGAGGCATCCAGAGTCTGACGGGATAGgactgagccactgtgtttcACAAAAACTATTCCGCTAACCTTTCAGCTGTAAGAAGCTCACTTCAGGATCTGCCCCATCCTGGTGGGTCACTCAGCCGGACTGATGTGGAATGCGACCCTTTATGACCCCATCCCACGGGCCTCTATTCAATGAGCCGGACTCGGGAGAGCACAGATAATAGAAGCAAGAGGCTGCCCCACAAAAAAGAGTGAAGTAACAGCAGCAGGAGTGTTCGGACTGGTAAGAAAGTTAAAGGGGCCCTTAAAGGTGGGGAAAAAGAGCTTAAAACACAAAAGAGCAGGAATAAAGAGACCTgtgaaaacaaaagtctttcttgGGACTGCAAGGCTTTCATAAAAGCAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000133826

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043952 lncRNA downstream 292295 18574221 ~ 18578522 (-) False XLOC_022264
TCONS_00043951 lncRNA downstream 298172 18571659 ~ 18572645 (-) True XLOC_022263
TCONS_00044984 lncRNA downstream 478527 18386787 ~ 18392290 (-) False XLOC_022261
TCONS_00044983 lncRNA downstream 485649 18382297 ~ 18385168 (-) False XLOC_022260
TCONS_00044982 lncRNA downstream 485650 18382297 ~ 18385167 (-) False XLOC_022260
TCONS_00043972 lncRNA upstream 6152 18904674 ~ 18913072 (-) False XLOC_022273
TCONS_00044986 lncRNA upstream 6152 18904674 ~ 18913159 (-) False XLOC_022273
TCONS_00043973 lncRNA upstream 13039 18911561 ~ 18913072 (-) True XLOC_022273
TCONS_00044987 lncRNA upstream 31391 18929913 ~ 18942050 (-) True XLOC_022274
TCONS_00043983 lncRNA upstream 253631 19152153 ~ 19153301 (-) True XLOC_022279
TCONS_00043966 mRNA downstream 65162 18790658 ~ 18805655 (-) False XLOC_022271
TCONS_00043967 mRNA downstream 65250 18794689 ~ 18805567 (-) True XLOC_022271
TCONS_00043962 mRNA downstream 163249 18702516 ~ 18707568 (-) False XLOC_022269
TCONS_00043963 mRNA downstream 163323 18702518 ~ 18707494 (-) False XLOC_022269
TCONS_00043964 mRNA downstream 163399 18703004 ~ 18707418 (-) True XLOC_022269
TCONS_00043974 mRNA upstream 55348 18953870 ~ 18981595 (-) False XLOC_022275
TCONS_00043975 mRNA upstream 55348 18953870 ~ 18982499 (-) True XLOC_022275
TCONS_00043976 mRNA upstream 87493 18986015 ~ 19051869 (-) False XLOC_022276
TCONS_00043977 mRNA upstream 87744 18986266 ~ 19051710 (-) True XLOC_022276
TCONS_00043978 mRNA upstream 168174 19066696 ~ 19103855 (-) True XLOC_022277
TCONS_00043968 other downstream 61 18869416 ~ 18870756 (-) False XLOC_022272
TCONS_00043965 other downstream 92860 18759542 ~ 18777957 (-) True XLOC_022270
TCONS_00043959 other downstream 258396 18611127 ~ 18612421 (-) True XLOC_022267
TCONS_00043958 other downstream 259807 18610016 ~ 18611010 (-) True XLOC_022266
TCONS_00043945 other downstream 488266 18382456 ~ 18382551 (-) True XLOC_022260
TCONS_00043971 other upstream 6152 18904674 ~ 18913072 (-) False XLOC_022273
TCONS_00043982 other upstream 250064 19148586 ~ 19153327 (-) False XLOC_022279
TCONS_00043987 other upstream 410274 19308796 ~ 19308910 (-) True XLOC_022283
TCONS_00043992 other upstream 596015 19494537 ~ 19503530 (-) True XLOC_022286
TCONS_00044009 other upstream 814573 19713095 ~ 19713228 (-) True XLOC_022291

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_05437862_05438101.mRNA True 399 mRNA 0.46 1 CI01000001 5437703 ~ 5438101 (-)