RNA id: TCONS_00043978


Basic Information

Item Value
RNA id TCONS_00043978
length 1146
RNA type mRNA
GC content 0.55
exon number 3
gene id XLOC_022277
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 19066696 ~ 19103855 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAACAAAAACCACCGAGTGCCGAGCAACCGAACTCTGAACGCCGTGGAGGTGAAGAGCAAGTTTGGAGCAGAATTCAGACGGTTCTCTTTGGACCGGTCCAAGCCGGGACGATTTGATGAATTCTATGGCTTACTACAGCACGTGCACCGGATCCCTAATGTGGACCTGCTTGTGGGTTACGCCGATGTTCACGGAGACCTGCTGCCAATCAACAACGATGACAACTATCATAAAGCAATCTCCATGGCAACGCCCCTGCTCCGCCTCTTTTTACAGCGAAAAGagGAGGCCGATTACTCAGCGTTCGGCACAGACACTGTGACCCGTAAGAAGACCCCGGCGGCCCTCGCAGCAGTCCTCCTTCGGCCGGACACCAACAAGAAGAAGCCTCCAATCATCATCAGCCTGCCCAAAGACTTCCGCCCAGTGTCCTCCATCATCGATGTGGACATTCTTCCAGAGACTCACCGCCGCGTCCGTCTCTATAAACATGGCCAGGAGAAACCTCTGGGCTTCTACATCCGGGACGGATCCAGCGTTCGTGTTACACCCCAAGGCTTGGAGAAGGTCCCAGGCATCTTCATTTCCCGCATGGTCCCCGGAGGCCTGGCGGAGAGCACGGGACTGCTGGCCGTCAATGATGAGGTGCTCGAAGTCAATGGCATTGAGGTGAGCGGCAAGTCGTTGGACCAGGTAACGGACATGATGATCGCTAACAGCCACAACCTCATTATAACGGTCAAACCGGCCAATCAGCGCAATAACATAGTACGAAGCAGCGGCGGTGGGGCCACATCTGGCAGCTCAGGACGATCTTCAGACAGCAGCACCAGCTTCCATGGTTACTCCGTGCCAGGCTCCACGTCCATGACTCCTTCTCATATTATACAGAACTTTGAGCCGGATGAAGAGAGTGAGGACGAGGAGGATCTGGTGATCGAGGCGGATAGAGGGGCCAAACTCATCCCGCCAGCAAAGGTTCGAGCGACCGCCAGCTCCAGCATGCCTGTTCTGCCCAGATACGAGCCTCACCTCGACCTACGGCCCTCAAACGGTACAATGGCGACCAGCACAAGCGTAGGGTCTCTGAACGCCCACGAAAGGCGTAATCTAGAAGAAGACGGAACAgtcattacactgtaa

Function

GO:

id name namespace
GO:0060341 regulation of cellular localization biological_process
GO:0007043 cell-cell junction assembly biological_process
GO:0007098 centrosome cycle biological_process
GO:0007163 establishment or maintenance of cell polarity biological_process
GO:0005634 nucleus cellular_component
GO:0005938 cell cortex cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0005080 protein kinase C binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-133 Predicted to enable protein kinase C binding activity. Predicted to be involved in centrosome cycle; establishment or maintenance of cell polarity; and regulation of cellular localization. Predicted to act upstream of or within cell division. Located in apical plasma membrane. Is expressed in otic placode. Orthologous to human PARD6B (par-6 family cell polarity regulator beta).

Ensembl:

ensembl_id ENSDART00000016901

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044987 lncRNA downstream 124646 18929913 ~ 18942050 (-) True XLOC_022274
TCONS_00044986 lncRNA downstream 153537 18904674 ~ 18913159 (-) False XLOC_022273
TCONS_00043972 lncRNA downstream 153624 18904674 ~ 18913072 (-) False XLOC_022273
TCONS_00043973 lncRNA downstream 153624 18911561 ~ 18913072 (-) True XLOC_022273
TCONS_00044985 lncRNA downstream 182314 18869416 ~ 18884382 (-) False XLOC_022272
TCONS_00043983 lncRNA upstream 48298 19152153 ~ 19153301 (-) True XLOC_022279
TCONS_00044988 lncRNA upstream 363685 19467540 ~ 19472619 (-) False XLOC_022284
TCONS_00044989 lncRNA upstream 365685 19469540 ~ 19471651 (-) True XLOC_022284
TCONS_00044000 lncRNA upstream 575829 19679684 ~ 19683128 (-) False XLOC_022289
TCONS_00044001 lncRNA upstream 578229 19682084 ~ 19683294 (-) False XLOC_022289
TCONS_00043976 mRNA downstream 14827 18986015 ~ 19051869 (-) False XLOC_022276
TCONS_00043977 mRNA downstream 14986 18986266 ~ 19051710 (-) True XLOC_022276
TCONS_00043975 mRNA downstream 84197 18953870 ~ 18982499 (-) True XLOC_022275
TCONS_00043974 mRNA downstream 85101 18953870 ~ 18981595 (-) False XLOC_022275
TCONS_00043966 mRNA downstream 261041 18790658 ~ 18805655 (-) False XLOC_022271
TCONS_00043979 mRNA upstream 32060 19135915 ~ 19140781 (-) True XLOC_022278
TCONS_00043980 mRNA upstream 43273 19147128 ~ 19153408 (-) False XLOC_022279
TCONS_00043981 mRNA upstream 44042 19147897 ~ 19153378 (-) False XLOC_022279
TCONS_00043984 mRNA upstream 116526 19220381 ~ 19225709 (-) True XLOC_022280
TCONS_00043985 mRNA upstream 123441 19227296 ~ 19230627 (-) True XLOC_022281
TCONS_00043971 other downstream 153624 18904674 ~ 18913072 (-) False XLOC_022273
TCONS_00043970 other downstream 168174 18870817 ~ 18898522 (-) True XLOC_022272
TCONS_00043969 other downstream 182314 18870590 ~ 18884382 (-) False XLOC_022272
TCONS_00043968 other downstream 195940 18869416 ~ 18870756 (-) False XLOC_022272
TCONS_00043965 other downstream 288739 18759542 ~ 18777957 (-) True XLOC_022270
TCONS_00043982 other upstream 44731 19148586 ~ 19153327 (-) False XLOC_022279
TCONS_00043987 other upstream 204941 19308796 ~ 19308910 (-) True XLOC_022283
TCONS_00043992 other upstream 390682 19494537 ~ 19503530 (-) True XLOC_022286
TCONS_00044009 other upstream 609240 19713095 ~ 19713228 (-) True XLOC_022291
TCONS_00044012 other upstream 718579 19822434 ~ 19825198 (-) False XLOC_022292

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_05544032_05558747.mRNA True 1944 mRNA 0.50 4 CI01000001 5543414 ~ 5558747 (-)