XLOC_022281 (guca1b)


Basic Information

Item Value
gene id XLOC_022281
gene name guca1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 19227296 ~ 19230627 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043985
GTCCTTGTGCTgaatctcaatccagtagagcaccttcaCCGGCAGGTTGAGTTTACTTTTACACTTTGGTAAACACAGACACCttttaacaactttatttttcttcaaagtgtctttttttattgtattgtatcatCAATTTGAGTAGCTTAGGGGTTTATTGGGATGTCTGGATCAGGAGGAACTCCAGGACACTAAAGCAGCCATATGTGATCATGGACATTTTGTGTTGAGAAGTAGagcttgtgtgttttttgttttcatctttCGTGATGGGTCAGCGGCTCAGCGATGATTCGGACGAAAAAGAGATTGATGTTGCTGAACTACAGGAGTGGTATAAGAAGTTTGTGATTGAATGTCCGAGTGGAACCCTCTTCATGCACGAGTTCAAGAGCTTTTTCGGTGTTACTGAAAACCCGGAAGCAGCGGATTACATAGAAAACATGTTCCGGGCTTTTGATAAAAATGGGGACAATACTATTGATTTTCTGGAATACGTGGCGGCCTTGAATCTAGTGCTGCGAGGGAAGTTGGAGCACAAACTGAAATggacatttaaaatgtatgacAAGGATGGAAGCGGTTGCATCGACAAAACAGAGCTCAAGGAGATTGTGGAGTCAATCTACAGACTAAAAAAAGCCTGCCATGGTGAACTCGATGCAGAATGTAACCTGCTTACCCCAGATCAGGTGGTGGACAGGATATTTGAGCTGGTGGATGAGAACGGAGATGGAGAGCTTTCTCTGGATGAGTTCATTGACGGGGCTCGGCGTGACAAGTGGGTCATGAAGATGCTGCAAATGGACGTGAACCCCGGGGACTGGATCAATGAACAGAGACGCCGCAGCGCCAACTTCTGAACTCCACATTCACCAAAATAACCCTTAACATAAGCCTGCCCTTTAACCAGTCTCAGTCCTGGGTTGTCAAAGTCAATCTTGAGTCATCAGTATAAACTGTATATACTTCTATCAACTACTTTATACATTATCTCCTAGTCCTTTTCTGACCAACAGAATTTAATCACTTTTACATGTGTATATTCATTTTTTCTTCattgtttcttgttttattgaCTTTTTGTTATTAGGACTATTATTATTCAGCATATAAGTGCATCTGACCTTTACTGTATATGGCATATTACTCAATTCATACAAAACAGCCAGTTTCAAATGGGCATATCTTTGTAAATATATGAATATTGTAAAGAGCTAAGTTTTTTGAAGGTCCTAATTGTAAAGGCACAGAATCTGTAAATGTCTCAAAAATAAAACTCACCAATTgtatattaaa

Function

symbol description
guca1b Enables calcium ion binding activity and calcium sensitive guanylate cyclase activator activity. Predicted to act upstream of or within visual perception. Is expressed in retina. Human ortholog(s) of this gene implicated in retinitis pigmentosa 48. Orthologous to human GUCA1B (guanylate cyclase activator 1B).

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0030250 guanylate cyclase activator activity molecular_function
GO:0008048 calcium sensitive guanylate cyclase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-011128-6 Enables calcium ion binding activity and calcium sensitive guanylate cyclase activator activity. Predicted to act upstream of or within visual perception. Is expressed in retina. Human ortholog(s) of this gene implicated in retinitis pigmentosa 48. Orthologous to human GUCA1B (guanylate cyclase activator 1B).

Ensembl:

ensembl_id ENSDARG00000013393

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043985 True 1302 mRNA 0.40 4 19227296 19230627

Neighbor

gene id symbol gene type direction distance location
XLOC_022280 oard1 coding downstream 1587 19220381 ~ 19225709 (-)
XLOC_022279 ebp coding downstream 73888 19147128 ~ 19153408 (-)
XLOC_022278 si:ch73-381f5.2 coding downstream 86515 19135915 ~ 19140781 (-)
XLOC_022277 pard6b coding downstream 123441 19066696 ~ 19103855 (-)
XLOC_022276 arfgef2 coding downstream 175427 18986015 ~ 19051869 (-)
XLOC_022282 klhdc8b coding upstream 19341 19249968 ~ 19434199 (-)
XLOC_022283 CR388168.3 coding upstream 78169 19308796 ~ 19308910 (-)
XLOC_022284 NA coding upstream 236913 19467540 ~ 19472619 (-)
XLOC_022285 tasorb coding upstream 243308 19473935 ~ 19486571 (-)
XLOC_022286 asb14b coding upstream 259756 19490383 ~ 19503530 (-)
XLOC_022274 NA non-coding downstream 285246 18929913 ~ 18942050 (-)
XLOC_022273 NA non-coding downstream 314137 18904674 ~ 18913159 (-)
XLOC_022272 NA non-coding downstream 328774 18869217 ~ 18898522 (-)
XLOC_022270 trpc4apb non-coding downstream 449339 18759542 ~ 18777957 (-)
XLOC_022267 CT027756.1 non-coding downstream 614875 18611127 ~ 18612421 (-)
XLOC_022291 CR352234.4 non-coding upstream 482468 19713095 ~ 19713228 (-)
XLOC_022292 NA non-coding upstream 591807 19822434 ~ 19831739 (-)
XLOC_022294 CT574579.1 non-coding upstream 677201 19907828 ~ 19907944 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_05599133_05600420 GUCA1B coding CI01000001 null 5598777 ~ 5601740 (-)