XLOC_022272


Basic Information

Item Value
gene id XLOC_022272
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 18869217 ~ 18898522 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044727
GGAGTGTTCGGACTGGTAAGAAAGTTAAAGGGGCCCTTAAAGGTGGGGAAAAAGAGCTTAAAACACAAAAGAGCAGGAATAAAGAGACCTgtgaaaacaaaagtctttcttgGGACTGCAAGGCTTTCATAAAAGCAAGAAAAACTTTGACCCTTAGCCTTCATTTCACCTCTTAAATTAATCCCACTGCTACCCATCATGCCAGTGGAGACCCTTCGTCCCACAGATGGACGTCTGACGGGGGGTCCCTTCACCTCTGCCATGCCTTTCCGTATCCTCAACAAAGGCCCGGGCTACTTTCGCAGACTACCAGAGACAGGAACTCGGAAGCTTAGTGCAGTTGAGCGCCTGGAAGCAGACAAGGCCAAGTACGTAAAGAGCCAGCAAGTAGCACTTACTAGACAAGAACCTGTGAAGCCCCCAATAATCCGCAAACCGCTATTATCACCAAGCATGTTAATGCAATGCAGAATAAATACTCCACCAGCAAGGAAGATTACCCGACGGGTACTGGATACAGAGAATGGAGGACCAGATCATGGCATGAGCAGAGGGCCGCAACTCAACCTGGAAGTACTCAATAATCTAATCAATGTTTGCGATGGGCCACTTGCATCCTCTTCCATTCCTTCCTCTCCTTCTCCTACAGCCTCCTCTCCCTCTTCTGGTGGTCAGAGCGTTGGTAGTGGACAATCTGCAGAACTGCAGCACTGCATCAATTTCAAAGCACATCTTGCCTCAACACCTAACTCCTCTCGCACATCTTCTCCTCTTAACAATCAACCCTCACCTGCAGAGCCTAGCCGAAGGCCGCCTCCTGTCCCAGCTAGAGCTCCCCGACTGGTACCACAAGGTAGTTATGGTCCACCCAACTCTGTAACTGTACGACGGGTGGATGTGCGACCTCAAGCGGAAATCAGAAAACCTCAAAGAATGCCTCTACAGCCCAAACCTCGGCAGACCCAACCACAGGTAGCCCAGCCACAGGCACCTCCCACACCTGTTCAGCAGCAACCTTCGGCAGCTCACCCTCCATCCCCCTGTATACCTTCCAGCCCACGACTTCTGCGCCCGGGCATTATACCCCCACCTTCCCCTGCTTTTACTCGCCTGTCTTCAGCCAGCTCACGAGGCTCACGTCCAGGTTCAACCCGGAAACACCCCTCCCTCCACCGTTCCAAATCAGACTTAAGTGATCGTTACTCTCGGGCCACAGCTGACCTGGAGCGGTTCTTTAATTACTGTGGGCTGGACCCAGATGAGGTGGATGGAATGGGTGGTGTGGAGTGTTTTGCCCGGGCAAATTCGGACATTGTTTCAGTCTCAAAGCTCCGCAGTGTCAGTACGCCTAGCTCAGAGTGCGGGGATGGACAGCGAGGAGaggaagaggatgatgaagatgacgaTATGGGGCCTATCAAACCCAGTGAGCGGGTTCCCTACGGCATCTCCGTCATCGAGAGGAATGCCCGTGTCATTAAGTGGCTCTATGGTATTAGGCAGGCACGAGATGTCTCACAAAACATTTCCAATGTCTAGAagcttcattcaggatgtctacTATGCCAGGAATATCAGATATAGACAACATAAATATGCCAGACTGAACTGAAGTCTTTCACACACTTAATATTTATTGTCTGAAAATGTTTAAAGGCTCTGACaagtaattgttttgtttgtatttgccTTACTTACGGGATAATGTTCATGATGTTTGTTACATAGAATTTACATG
>TCONS_00043968
ATGCCAGTGGAGACCCTTCGTCCCACAGATGGACGTCTGACGGGGGGTCCCTTCACCTCTGCCATGCCTTTCCGTATCCTCAACAAAGGCCCGGGCTACTTTCGCAGACTACCAGAGACAGGAACTCGGAAGCTTAGTGCAGTTGAGCGCCTGGAAGCAGACAAGGCCAAGTACGTAAAGAGCCAGCAAGTAGCACTTACTAGACAAGAACCTGTGAAGCCCCCAATAATCCGCAAACCGCTATTATCACCAAGCATAATAAATACTCCACCAGCAAGGAAGATTACCCGACGGGTACTGGATACAGAGAATGGAGGACCAGATCATGGCATGAGCAGAGGGCCGCAACTCAACCTGGAAGTACTCAATAATCTAATCAATGTTTCCTCCTCTCCCTCTTCTGGTGGTCAGAGCGTTGGTAGTGGACAATCTGCAGAACTGCAGCACTGCATCAATTTCAAAGCACATCTTGCCTCAACACCTAACTCCTCTCGCACATCTTCTCCTCTTAACAATCAACCCTCACCTGCAGAGCCTAGCCGAAGGCCGCCTCCTGTCCCAGCTAGAGCTCCCCGACTGGTACCACAAGGTAGTTATGGTCCACCCAACTCTGTAACTGTACGACGGGTGGATGTGCGACCTCAAGCGGAAATCAGAAAACCTCAAAGAATGCCTCTACAGCCCAAACCTCGGCAGACCCAACCACAGGTAGCCCAGCCACAGGCACCTCCCACACCTGTTCAGCAGCAACCTTCGGCAGCTCACCCTCCATCCCCCTGTATACCTTCCAGCCCACGACTTCTGCGCCCGGGCATTATACCCCCACCTTCCCCTGCTTTTACTCGCCTGTCTTCAGCCAGCTCACGAGGTTCAACCCGGAAACACCCCTCCCTCCACCGTTCCAAATCAGACTTAAGTGATCGTTACTCTCGGGCCACAGCTGACCTGGAGCGGTTCTTTAATTACTGTGGGCTGGACCCAGATGAGGTGGATGGAATGGGTGGTGTGGAGTGTTTTGCCCGGGCAAATTCGGACATTGTTTCAGTCTCAAAGCTCCGCAGTGTCAGTACGCCTAGCTCAGAGTGCGGGGATGGACAGCGAGGAGaggaagaggatgatgaagatgacgaTATGGGGCCTATCAAACCCAGTGAGCGGGTTCCCTACGGCATCTCCGTCATCGAGAGGAATGCCCGTGTCATTAAGTGGCTCTATGGTATTAGGCAGGCACGAGATGTCTCACAAAACATTTCCAATGTCTAG
>TCONS_00044985
acacacacacacactcgcacagaTACATTCACTGGAGCGCCGACTCTCTGCTGAGCTCCATTCTTTAAAAGGCTCTACAGCTTGAGAGCTTCATCCTGCTCTCGGAAATCACTTGTCCTGGAAAAGAGTCCAGGATTGCAAAAAAAGGCTCTGGTTTTTAAGGAGTGTTTTACAAGTTGGAGGCATCCAGAGTCTGACGGGATAGgactgagccactgtgtttcACAAAAACTATTCCGCTAACCTTTCAGCTGTAAGAAGCTCACTTCAGGATCTGCCCCATCCTGGTGGGTCACTCAGCCGGACTGATGTGGAATGCGACCCTTTATGACCCCATCCCACGGGCCTCTATTCAATGAGCCGGACTCGGGAGAGCACAGATAATAGAAGCAAGAGGCTGCCCCACAAAAAAGAGTGAAGTAACAGCAGCAGGAGTGTTCGGACTGGTAAGAAAGTTAAAGGGGCCCTTAAAGGTGGGGAAAAAGAGCTTAAAACACAAAAGAGCAGGAATAAAGAGACCTgtgaaaacaaaagtctttcttgGGACTGCAAGGCTTTCATAAAAGCAAGAAAAACTTTGACCCTTAGCCTTCATTTCACCTCTTAAATTAATCCCACTGCTACCCATCATGCCAGTGGAGACCCTTCGTCCCACAGATGGACGTCTGACGGGGGGTCCCTTCACCTCTGCCATGCCTTTCCGTATCCTCAACAAAGGCCCGGGCTACTTTCGCAGACTACCAGAGACAGGAACTCGGAAGCTTAGTGCAGTTGAGCGCCTGGAAGCAGACAAGGCCAAGTACGTAAAGAGCCAGCAAGTAGCACTTACTAGACAAGAACCTGTGAAGCCCCCAATAATCCGCAAACCGCTATTATCACCAAGCATGTTAATGCAATGCAGAATAAATACTCCACCAGCAAGGAAGATTACCCGACGGGTACTGGATACAGAGAATGGAGGACCAGATCATGGCATGAGCAGAGGGCCGCAACTCAACCTGGAAGTACTCAATAATCTAATCAATGTTTGCGATGGGCCACTTGCATCCTCTTCCATTCCTTCCTCTCCTTCTCCTACAGCCTCCTCTCCCTCTTCTGGTGGTCAGAGCGTTGGTAGTGGACAATCTGCAGAACTGCAGCACTGCATCAATTTCAAAGCACATCTTGCCTCAACACCTAACTCCTCTCGCACATCTTCTCCTCTTAACAATCAACCCTCACCTGCAGAGCCTAGCCGAAGGCCGCCTCCTGTCCCAGCTAGAGCTCCCCGACTGGTACCACAAGCCAGCTCACGAGGCTCACGTCCAGGTTCAACCCGGAAACACCCCTCCCTCCACCGTTCCAAATCAGACTTAAGTGATCGTTACTCTCGGGCCACAGCTGACCTGGAGCGGTTCTTTAATTACTGTGGGCTGGACCCAGATGAGGTGGATGGAATGGGTGGTGTGGAGTGTTTTGCCCGGGCAAATTCGGACATTGTTTCAGTCTCAAAGCTCCGCAGTGTCAGTACGCCTAGCTCAGAGTGCGGGGATGGACAGCGAGGAGaggaagaggatgatgaagatgacgaTATGGGGCCTATCAAACCCAGTGAGCGGGTTCCCTACGGCATCTCCGTCATCGAGAGGAATGCCCGTGTCATTAAGTGGCTCTATGGTATTAGGCAGGCACGAGATGTCTCACAAAACATTTCCAATGTCTAG
>TCONS_00043969
acacacacacacactcgcacagaTACATTCACTGGAGCGCCGACTCTCTGCTGAGCTCCATTCTTTAAAAGGCTCTACAGCTTGAGAGCTTCATCCTGCTCTCGGAAATCACTTGTCCTGGAAAAGAGTCCAGGATTGCAAAAAAAGGCTCTGGTTTTTAAGGAGTGTTTTACAAGTTGGAGGCATCCAGAGTCTGACGGGATAGgactgagccactgtgtttcACAAAAACTATTCCGCTAACCTTTCAGCTGTAAGAAGCTCACTTCAGGATCTGCCCCATCCTGGTGGGTCACTCAGCCGGACTGATGTGGAATGCGACCCTTTATGACCCCATCCCACGGGCCTCTATTCAATGAGCCGGACTCGGGAGAGCACAGATAATAGAAGCAAGAGGCTGCCCCACAAAAAAGAGTGAAGTAACAGCAGCAGGAGTGTTCGGACTGGTAAGAAAGTTAAAGGGGCCCTTAAAGGTGGGGAAAAAGAGCTTAAAACACAAAAGAGCAGGAATAAAGAGACCTgtgaaaacaaaagtctttcttgGGACTGCAAGGCTTTCATAAAAGCAAGAAAAACTTTGACCCTTAGCCTTCATTTCACCTCTTAAATTAATCCCACTGCTACCCATCATGCCAGTGGAGACCCTTCGTCCCACAGATGGACGTCTGACGGGGGGTCCCTTCACCTCTGCCATGCCTTTCCGTATCCTCAACAAAGGCCCGGGCTACTTTCGCAGACTACCAGAGACAGGAACTCGGAAGCTTAGTGCAGTTGAGCGCCTGGAAGCAGACAAGGC
>TCONS_00043970
GGCTCTCGGGGTTCAGAAAGATGTAGGTACTCTCACTTTTCTTTCTCCAAGACGTTTCGCCGCTGAAAACTTTTATACGGTACATTACAATCAAGTTTCAATCCTTACCAGTTTCCGGACATCGCCGCAGTGTTATTGGGGAAAAGAGTCCAGGATTGCAAAAAAAGGCTCTGGTTTTTAAGGAGTGTTTTACAAGTTGGAGGCATCCAGAGTCTGACGGGATAGgactgagccactgtgtttcACAAAAACTATTCCGCTAACCTTTCAGCTGTAAGAAGCTCACTTCAGGATCTGCCCCATCCTGGTGGGTCACTCAGCCGGACTGATGTGGAATGCGACCCTTTATGACCCCATCCCACGGGCCTCTATTCAATGAGCCGGACTCGGGAGAGCACAGATAATAGAAGCAAGAGGCTGCCCCACAAAAAAGAGTGAAGTAACAGCAGCAGGAGTGTTCGGACTGGTAAGAAAGTTAAAGGGGCCCTTAAAGGTGGGGAAAAAGAGCTTAAAACACAAAAGAGCAGGAATAAAGAGACCTgtgaaaacaaaagtctttcttgGGACTGCAAGGCTTTCATAAAAGCAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000057403

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044727 False 1738 lncRNA 0.50 1 18869217 18870954
TCONS_00043968 False 1263 processed_transcript 0.53 4 18869416 18870756
TCONS_00044985 False 1703 lncRNA 0.50 3 18869416 18884382
TCONS_00043969 False 796 processed_transcript 0.49 2 18870590 18884382
TCONS_00043970 True 589 processed_transcript 0.46 2 18870817 18898522

Neighbor

gene id symbol gene type direction distance location
XLOC_022271 nsfl1c coding downstream 63562 18790658 ~ 18805655 (-)
XLOC_022270 trpc4apb coding downstream 91260 18759542 ~ 18777957 (-)
XLOC_022269 zgc:103759 coding downstream 161649 18702516 ~ 18707568 (-)
XLOC_022268 arhgap4b coding downstream 200381 18615992 ~ 18668836 (-)
XLOC_022267 CT027756.1 coding downstream 256796 18611127 ~ 18612421 (-)
XLOC_022273 NA coding upstream 6152 18904674 ~ 18913159 (-)
XLOC_022274 NA coding upstream 31391 18929913 ~ 18942050 (-)
XLOC_022275 bcl2l1 coding upstream 55348 18953870 ~ 18982499 (-)
XLOC_022276 arfgef2 coding upstream 87493 18986015 ~ 19051869 (-)
XLOC_022277 pard6b coding upstream 168174 19066696 ~ 19103855 (-)
XLOC_022266 CT027756.2 non-coding downstream 258207 18610016 ~ 18611010 (-)
XLOC_022261 NA non-coding downstream 453345 18386787 ~ 18415872 (-)
XLOC_022260 NA non-coding downstream 484049 18382297 ~ 18385168 (-)
XLOC_022283 CR388168.3 non-coding upstream 410274 19308796 ~ 19308910 (-)
XLOC_022284 NA non-coding upstream 569018 19467540 ~ 19472619 (-)
XLOC_022291 CR352234.4 non-coding upstream 814573 19713095 ~ 19713228 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_05437862_05438101 NA coding CI01000001 null 5437703 ~ 5438101 (-)