XLOC_022271 (nsfl1c)


Basic Information

Item Value
gene id XLOC_022271
gene name nsfl1c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 18790658 ~ 18805655 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043966
AATATGGCCCGCGAGCTAAAATTAGCCCATTGTAACGTTTGATGCAGCCCAGTGCATCACATTTGAGAATAGAATGAGTAGCTGTGATGGAGATGCTTGGGGTGAACATGTCTTTAACggagatcatcatttctaatttggcGTAAacttttttgttagtttgtttgtttgttgtttgtttgtgagCAATTCCAGGCAAAAACTAGAGTAAGTCTATTCTGATATAAAtgagatgtttttgtttttactgaaataagttcattttaaaatgtaaaataaacgaTGCTGTTTTAGTTAATATACACCAAtgttttcttcttatttttaaatattattaaataaattaactatatttatttacctttggcccactagcctcagtgaagtttggtttttgacccttcataagaaaaagtttgggcaccttgGTCTAAATCTAAAATATTGCGCTCCAAAACAGCGGAACCAGCTTTCGCTTGCCCCGTGTTTTGTCGGATCCTTCCTCGGCGTGACACATCAAAATGGCGGAGCGGGAAGAAGCGGTGAGGGGATTCGTCGCTGTTACTGATGTTGATGAAGAGAGGGCCCGGTTCTTCCTCGAGTCCGCCGGCTGGGACCTGCAGCTTGCTCTTGCTAATTtctttgaagatggaggagaagATGATATTGCCACTCTTCCTCAGCCAGAGTCTGGATCTGTCACTCGACCCACAGGACCCAGCGAACACAGAGTGACATCCTTCAGAGATCTGATgcatgaggatgatgatgacagTGGTGATGAGGAAGGCCAGAGGTTTTTTGCCGGTGGCTCAGAACGCAGTGGCCAGCAGATTGTGGGTCCTCCCAAAAAGAAGAACTCAAATGAGCTGATTGAGGACTTGTTTAAAGGGGCTAAGGAGCATGGTGCAGTTCCTGTTGACAAAGCTGGCAAAGGACTTGGAGAATCCAGCAAGTCCAAGCCGTTTGGTGGTGGCGGTTATCGATTGGGTGCAGCACCAGAAGAGGAGTCGACTTATGTGGCAGGAGCCAGGAGACAGCCTGGAAGTTCACAAGATCAGGTGCATGTGGTGCTGAAGCTCTGGAAGACAGGCTTTAGTCTTGATGAAGGAGAGCTGAGGACCTACAGTGATCCTGAGAACGCTCTTTTCCTGGAGTCCATCCGCAGAGGGGAGATTCCTCTGGAATTGAGGCAGCGCTTCAGAGGTGGGCAGGTAAACCTAGACATGGAGGACCATCGAGATGAAGACTTCTCCAAACCCAGACTTGCTTTCAAAGCCTTTACTGGAGAGGGACAGAAACTCGGCAGTGCCACTCCAGAGCTGGTGTCTCTCCAGAGAAGCCCACAGGACCAGGCTGCCAGTGAAGCAGAGGCCAGTGCTTCCATCAGCGTGGACACCTCTCAACCCATCACCAGCATCCAGATCAGACTGGCTGACGGAGGACGGCTGGTGCAGAAGTTCAACCACACCCACAGGGTGTCTGATGTGCGTCAGTTTGTGGCTAGCGCTCGACCTGCGTTGGCCGCCACAGAGTTTGTTCTCATGACCACCTTCCCCAACAAGGAGCTGACGGACGAGAGCCTGACACTGAAGGAAGCAAATCTGCTGAACGCCGTCATCGTGCAGCGGCTAAAGTGACAGCGCCATCCGTCCACCGGCCTGCACTCTGGAGTTGGAGAAATCTGGACTGAAAGGACTTCtaattacattatattgttttctttaGTGATCTGTTATTCCTCTGTGACAGTTTTGGGGATGGTGGATGTTTCAGGCTAAGAGAAGCGGAAGATGAAGGGGAAGCAATCGCACTGTGATATAGTTAAAGGGAAAAGAACCGAAGCGAAGATCTAACAAGTTTATGCTTTTAGAGTAActgctgaatatatatatatatattcagactTGAATAAAGAGCTTTCAGAAGAGTTTTGACATCCGTTTACCTCGGTTGCTCCTGCTTTACCTCCTCCTGCTCAGTTTTATTCCTCATTCTGTGATTCATCTCTTCTCACACAAAAAGAAAAGCTTAAAGGAAGAAATGTTTGTGGTTAAAGGAAGTAGCCTTATATTCATTCCCCATACGGTGACCTCAAAGATCAACCTCAGCTGTCTATGATCAATCGTTTTTTTACAAAAGAGTTTTCTTTTATGAGTTCTGAggctatattttcatttattttattgttatattaacTTTGCttggttataaaataaaattaaatgatgagATGGTTGGCTAAGAGCTGACTTCAGTTTCAAACGCAGCTGCTGGTGAACATAACAGCGGCTTTCCTGTATTCTATGCAGCAACTGATTATATTTCTGGACATACTGCGTGATTGTGAGCTGTGGTGAACATGATATTAAACCCCTTGTCTGGCATTGAAGAGCGCTTTCTTGTTGAGTGTTGGCATAACCAGGTGCTGATATCCTCTCAGGGGCTTTTCCCGCCCCTTTTACATTTCAGGAATCGGTTTGTTTTTGAAAGCTTTGTTTGTCGTAAGTTCATGCTCGACGGCGTGAGGGAAGCTATTAGTCGACAAACTGGAGTCATGAGTTTGTCATGCTCTCCCAAAGCCTGTGGAGTCGACCGTCGTGCAGTGTGTTTGCGAGGAATATTTTCTGATTTGCCGCCGTAATGACACTGAAAGCAGACATTAATGACTTGATcgaatttatttagaaaaatacatCTTGAAGTTTAAGCGTATGGATACCACCATACAAGTATCCCTTCAGACTGTAATGAGATTTAGGTCGTATGGCCCCTTTTATTATTGAATTGGATATAACTCGGCTAATCAGATATAAGCCTATTAGTCATGCTTGCCCTTTAAGAGTTAACGAAGTAGTGCTGATCGTTTACGCTGCGTGCGTCGTGGCTATATTTTCAGCCGTGCGTATTTATATGTGGCTGAATACAGTCTAAATAAGCGAATGTCTCTGCCACGTTGAAGAGTATAATCGCTCAGTCGTGTATGTCAACAGCAAACATTCTTCGCGtggcttctcctttttttcctTCAGGACGTTCATTCCCTTTTGCGCAGATGGATGTACATGATGCCGCTGCACAGGAGCAAAGGCACACAGACCCAGGCCAGGAAAAAGCAGAAGCCGAAGTGTCCCGAACTCAACTCCTGCATCCCCTGAAGAATTTCTTTGTTGTGCAGAGTGTAAATGAGAACTGCGGTGAAATCGTTGAGGCCTGAGGGGGAGACAGAAATGGTCAGAAGGACACCATTTAAAAACACTGCAGATGTTTAACTTCTAAACAATACAACCAGTGTGTGTGTTCAATGTCTAGTGTGTTTTGGGACATAAATAATCCATCGGTTTACATGGCTTCAATAGAAGGAAGAAAAATCTTAAGCAGTTCAACATTAAGCATGGTTTTAGTAAAGTAAAAGTGCACAAAGgaacttttttttgcaataaactgCAATTTGTTTAGCCACAATTCCTCTACAAGATGCCATGCTTGAACTGATTAGTGTAGCAAAACATGGTTAATGTAGTTAAACCATTGATAATTTTCAAAATTGACTACTAATTGTGACTTTTCGGACTATAACAATGAAATGTTGATGCATAACAGGGTTTATTACCCTGTACAACAAGCTAAtaacctgcttttattttatttttccaaaatatattaAGTTTAGTTTGAACTACAGAactaaattctttaaaaaaatcaaaataaaaagtgaaaagatAATTGgttaaaatttgaaaataaaaatgcaaataaattacataaaatattcaaaaaacactacataatagaaaaataataaaaacaatgttcAGTGCATTTTGTATTAGCGTTTTACAGCTTTCCAGTGTTAACTGGTAAAATGTGTTAATTGTTGCTAAAATGCAAGACGTGAACAATACAAGAAGACACCAACAAGGGTTTCAAAGCTCAAACATCAAAAAATGTTGCATGTTCCACCTGGTTCAAAAAGTGTTGAAAGGGGGTCTGTATTTTATACAAATGTTGTAATTTTCCTTTAACAGAGTATGTGAGCTTCTCCAGCTAGTCATTTCTTTAATCCACTTCCACAGGATGGccttgagtttttattttttacaatttaaagcaaTTATAgaaattaatgatgagttaatgtgtGTGCTAATCAACTACAACATGAATCTCGTGTGAATAACAGCTATACTTTAATTACTTGTTAgaacatgattgtttgttaatgtgTTAATTACCACATTATTGAATAGGACCTTCTACCAGAAATTTACATTTTCACTTGTAAtaaatgtgacagggcctgacctAAGCTTGTCGTcctcaaaaaaataatacaaaaacaagcataaaatcatacaattcaatgttagaacaatttttttaaacaacagcaaGTGTAAAATTTAAACGTAAAGAATAACataagtgtaaaaaataaattacataatcaataaataaaataataacttcaaTATAACTAAGGGATTATTTAATCTACCCAACTGACCGCAATTTTCCTACTCAATTAACTTCAACTCCTTTGCAATTATAATTGTATATTGATATTTCTTACTATTAATATACTAGAGCGAgtctatatataaattaaaatcagTAATAGAAGCCTTTAAACAAAGTTTACAATTATTCAATCTACATTTATGAATATGAAATTGACCAAATACGCAtgcttgatcactgtcagcttcttctTCATCAAATGATGTCGCTTCAGAGTCACAGCCTTAAACATGTAGACTATTGCACTcatttaaagttaaattttatgcaaatttgagtgGACTAACAGAAAGATGGGGACAATTGTAAACTTATTtgcattttagtatttatttgtagaatttatttataatttcatgtttttaagcAATCGTTGtgaacttaaacttgctatttctcaagtattttttttctaaataacagtttttagcataacaaaatattaaagctGTAAGTTTAATTATGCTGAGGACAAGGAgaatgacagggtttgtacatttgtaaagtgtttttaataaagaacaaaaatctgagaacTAAATGAGTGACATGATACAGAACAACAATCAAGCCTTAGTCCATTTTAGAAATTTTCGGGATgaggatgaaatactttttattcactgtgtTTATGTTTTCATctcagggacagataatgtacatttctggtagaatgtcccatatgcttaatttaaccatcatgagctccagagctgttaatgtatatttatatcatgactttacttagaggggcacatcatcattaacccattcttaaccaCTCATGAACTTCTTATGCATttgcgtttacactgaataacaaaggaaaagtgttctgtcaacaccAACATGagcagtttaaacacaggagttcatgagtagatAAGAatgagttaatggtgatgtgcccctccaagtaaagtcatgacataattatacagctcatgagttcatgttaatcacatttaacttaaatgtaaattctaattaatacattaattaacatcatgtactaacaagtaatcaAGGTcgctgttattcacacatgagactcatgttgtagttaaagtaaTTCATGATTAGCGCATGCCATAACTctttattaattcataataaagtaatgtttagcttagatattaatacatcattattcatgtactgttattgtaaagtgttaccttttaaagagctcatattatgggttttttgaaaatgaccttccatgtagtgtgtaacagctcacatgaagtgaaatatccagctaaggcttaaatctgtaagtttAGTGTTTAAAACTgatgattcatctataaaagagtcgattatAGTGCTTCAAACAAGTCGTCTTAATAAGGAGTCATAGTTGTTTCGCGTGACGCGGCTACGAAACACAAGCCCCGCCCAATAGTTGCGGGCGCAAACACGGGAAATTTGAAACTTGTggccccgcccactaacacagaaataaaggcacacacacatactctacccAAAGAAGAAACTGTGTGAAgagggtccgtgtatcatccgttcatttgattattccttttattacggaaaacgaaacatcagaaaaacgatgaatatttcgtttttctgtttattctgttggcagaaaaaacggaaactcatctgttattctgcttattaacttaaaacgaaatattaaaacaaacacaaaaccaaaacgaaataatgagtcaaaaaatggtctGTGTACGGTtcgtgtacattttgttcatttgttttccattttcaaacagaataaaggaaatggagaaaacgccCGTTTTtacgtttttcttttgctcacgagaaaacgaaaaaacgagattttggctggattttcttttttggtttagggtaggaaaacggataaacgactttaaaattcattttacacatgtaggcggtgctgaaacgcccactttcctctaattggtcaaccaaatctgcgctcgtgacgtcaccctcaaaataaaagccttacacgcaggcttttaattaatattatttaattatatatataaacaaagtttaca
>TCONS_00043967
GGAGATGCTTGGGGTGAACATGTCTTTAACggagatcatcatttctaatttggcGTAAacttttttgttagtttgtttgtttgttgtttgtttgtgagCAATTCCAGGCAAAAACTAGAcctcagtgaagtttggtttttgacccttcataagaaaaagtttgggcaccttgGTCTAAATCTAAAATATTGCGCTCCAAAACAGCGGAACCAGCTTTCGCTTGCCCCGTGTTTTGTCGGATCCTTCCTCGGCGTGACACATCAAAATGGCGGAGCGGGAAGAAGCGGTGAGGGGATTCGTCGCTGTTACTGATGTTGATGAAGAGAGGGCCCGGTTCTTCCTCGAGTCCGCCGGCTGGGACCTGCAGCTTGCTCTTGCTAATTtctttgaagatggaggagaagATGATATTGCCACTCTTCCTCAGCCAGAGTCTGGATCTGTCACTCGACCCACAGGACCCAGCGAACACAGAGTGACATCCTTCAGAGATCTGATgcatgaggatgatgatgacagTGGTGATGAGGAAGGCCAGAGGTTTTTTGCCGGTGGCTCAGAACGCAGTGGCCAGCAGATTGTGGGTCCTCCCAAAAAGAAGAACTCAAATGAGCTGATTGAGGACTTGTTTAAAGGGGCTAAGGAGCATGGTGCAGTTCCTGTTGACAAAGCTGGCAAAGGACTTGGAGAATCCAGCAAGTCCAAGCCGTTTGGTGGTGGCGGTTATCGATTGGGTGCAGCACCAGAAGAGGAGTCGACTTATGTGGCAGGAGCCAGGAGACAGCCTGGAAGTTCACAAGATCAGGTGCATGTGGTGCTGAAGCTCTGGAAGACAGGCTTTAGTCTTGATGAAGGAGAGCTGAGGACCTACAGTGATCCTGAGAACGCTCTTTTCCTGGAGTCCATCCGCAGAGGGGAGATTCCTCTGGAATTGAGGCAGCGCTTCAGAGGTGGGCAGGTAAACCTAGACATGGAGGACCATCGAGATGAAGACTTCTCCAAACCCAGACTTGCTTTCAAAGCCTTTACTGGAGAGGGACAGAAACTCGGCAGTGCCACTCCAGAGCTGGTGTCTCTCCAGAGAAGCCCACAGGACCAGGCTGCCAGTGAAGCAGAGGCCAGTGCTTCCATCAGCGTGGACACCTCTCAACCCATCACCAGCATCCAGATCAGACTGGCTGACGGAGGACGGCTGGTGCAGAAGTTCAACCACACCCACAGGGTGTCTGATGTGCGTCAGTTTGTGGCTAGCGCTCGACCTGCGTTGGCCGCCACAGAGTTTGTTCTCATGACCACCTTCCCCAACAAGGAGCTGACGGACGAGAGCCTGACACTGAAGGAAGCAAATCTGCTGAACGCCGTCATCGTGCAGCGGCTAAAGTGACAGCGCCATCCGTCCACCGGCCTGCACTCTGGAGTTGGAGAAATCTGGACTGAAAGGACTTCtaattacattatattgttttctttaGTGATCTGTTATTCCTCTGTGACAGTTTTGGGGATGGTGGATGTTTCAGGCTAAGAGAAGCGGAAGATGAAGGGGAAGCAATCGCACTGTGATATAGTTAAAGGGAAAAGAACCGAAGCGAAGATCTAACAAGTTTATGCTTTTAGAGTAActgctgaatatatatatatatattcagactTGAATAAAGAGCTTTCAGAAGAGTTTTGACATCCGTTTACCTCGGTTGCTCCTGCTTTACCTCCTCCTGCTCAGTTTTATTCCTCATTCTGTGATTCATCTCTTCTCACACAAAAAGAAAAGCTTAAAGGAAGAAATGTTTGTGGTTAAAGGAAGTAGCCTTATATTCATTCCCCATACGGTGACCTCAAAGATCAACCTCAGCTGTCTATGATCAATCGTTTTTTTACAAAAGAGTTTTCTTTTATGAGTTCTGAggctatattttcatttattttattgttatattaacTTTGCttggttataaaataaaattaaatgatgagATGGTTGGCTAAGAGCTGACTTCAGTTTCAAACGCAGCTGCTGGTGAACATAACAGCGGCTTTCCTGTATTCTATGCAGCAACTGATTATATTTCTGGACATACTGCGTGATTGTGAGCTGTGGTGAACATGATATTAAACCCCTTGTCTGGCATTGAAGAGCGCTTTCTTGTTGAGTGTTGGCATAACCAGGTGCTGATATCCTCTCAGGGGCTTTTCCCGCCCCTTTTACATTTCAGGAATCGGTTTGTTTTTGAAAGCTTTGTTTGTCGTAAGTTCATGCTCGACGGCGTGAGGGAAGC

Function

symbol description
nsfl1c Predicted to enable ubiquitin binding activity. Predicted to be involved in several processes, including autophagosome assembly; nuclear membrane reassembly; and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in Golgi stack. Predicted to be active in cytosol and nucleus. Orthologous to human NSFL1C (NSFL1 cofactor).

GO:

id name namespace
GO:0000045 autophagosome assembly biological_process
GO:0007030 Golgi organization biological_process
GO:0061025 membrane fusion biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0031468 nuclear envelope reassembly biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0043130 ubiquitin binding molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-041114-160 Predicted to enable ubiquitin binding activity. Predicted to be involved in several processes, including autophagosome assembly; nuclear membrane reassembly; and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in Golgi stack. Predicted to be active in cytosol and nucleus. Orthologous to human NSFL1C (NSFL1 cofactor).

Ensembl:

ensembl_id ENSDARG00000087640

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043966 False 6566 mRNA 0.38 9 18790658 18805655
TCONS_00043967 True 2279 mRNA 0.47 10 18794689 18805567

Neighbor

gene id symbol gene type direction distance location
XLOC_022270 trpc4apb coding downstream 12701 18759542 ~ 18777957 (-)
XLOC_022269 zgc:103759 coding downstream 83090 18702516 ~ 18707568 (-)
XLOC_022268 arhgap4b coding downstream 121822 18615992 ~ 18668836 (-)
XLOC_022267 CT027756.1 coding downstream 178237 18611127 ~ 18612421 (-)
XLOC_022266 CT027756.2 coding downstream 179648 18610016 ~ 18611010 (-)
XLOC_022272 NA coding upstream 63562 18869217 ~ 18898522 (-)
XLOC_022273 NA coding upstream 99019 18904674 ~ 18913159 (-)
XLOC_022274 NA coding upstream 124258 18929913 ~ 18942050 (-)
XLOC_022275 bcl2l1 coding upstream 148215 18953870 ~ 18982499 (-)
XLOC_022276 arfgef2 coding upstream 180360 18986015 ~ 19051869 (-)
XLOC_022261 NA non-coding downstream 374786 18386787 ~ 18415872 (-)
XLOC_022260 NA non-coding downstream 405490 18382297 ~ 18385168 (-)
XLOC_022283 CR388168.3 non-coding upstream 503141 19308796 ~ 19308910 (-)
XLOC_022284 NA non-coding upstream 661885 19467540 ~ 19472619 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_05403970_05409286 NSFL1C coding CI01000001 null 5403970 ~ 5409286 (-)