XLOC_022269 (zgc:103759)


Basic Information

Item Value
gene id XLOC_022269
gene name zgc:103759
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 18702516 ~ 18707568 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043962
aaataaagtCAGGTGATTATAGTAGCACGTTACTACTGCTCGCAAACGCAAATGTTATCAGAGTTGTTTCTTCCTTATCAGAAAGCGTcaggtttatttgtttatttatcgcTAGTCCTGTAATGGCGGAAGAGAAGATGACGAGGGACGAAGCGTTGGCCCGTCAGGGCTACAGACACGCGTGTCATGTCATGCTGTATGGAGACTCCAGTGCCAAACTCTTCGGGAAAATCCCAATCAAACATATTGTTTTGATGCAGATGCGCTTTGATGGCTTGCTGGGCTTTCCAGGGGGgTTAGTGAACCCGTCCGAGGAAACGCTGGAGGCGGGGCTTAGCAGAGAGCTACACGAAGAAGTGGGCGTGGCTGTGCCGGTGGGCGTGGACGATCACATGTCCTCCTGTGTATCTTCATCATGCCCTCGTCTCATCACACACTTCTACATCAAGAAGATGACAGAGGCAGAGCTGAAAGAGATAGAGAGAGCGGCTGTAGCCTCCGCCACTGACCACGGTTTAGAGGTATTGGGTATGGTGCGTGTGCCGCTCTACTTCCTGAAGAAGGGAGGTGGTCTCCCCTACTTCCTTTCCCACTCGTTCATCAGTAACTCTCGGGCGCAGCTGCTCTCTGCCCTGCGCCACTGCAGGCTGCTGTCTCAAGGGGAGCTGAAGGAGGCTGTGAGGCAAGCGGAGCAGATGAGACGCACACACAGCTACATCACATTAGCCCAACCCCACCAGAGCTGCTAGAAACTCCCTCCTGTCCTCACACTGCCCTCAGTTCCTCATCCGGGCATGTACAGTGTGTCTTCTCTGTAGATATCCTAACATTTCAAGACCCCACATTCACTTGGTAGATCGTTTTGTTTAATAACGTTTGACTTATTTGACAATATTTCCTGCTTTACGCTACTAGTGAATCACTAGTGAAAACAAATACGACTCTGCGATGTTGTAATTACACCTCATTTACTAGTTAAATTGTTAATAATGCGTatgatttgtgtgtgcatgtgtgatttattatttatgtagatGCATATGAGTTACCTGATTGTTATTCTCATGTTTGCTATTTAAATTAGTTCTGTTTATGAGAGATATGTGCATGAAGAATTGAGCAAGCTGGTTGGGCTAATAAACAGCATATAAGAtt
>TCONS_00043963
TTATCAGAAAGCGTcaggtttatttgtttatttatcgcTAGTCCTGTAATGGCGGAAGAGAAGATGACGAGGGACGAAGCGTTGGCCCGTCAGGGCTACAGACACGCGTGTCATGTCATGCTGTATGGAGACTCCAGTGCCAAACTCTTCGGGAAAATCCCAATCAAACATATTGTTTTGATGCAGATGCGCTTTGATGGCTTGCTGGGCTTTCCAGGGGGgTTAGTGAACCCGTCCGAGGAAACGCTGGAGGCGGGGCTTAGCAGAGAGCTACACGAAGAAGTGGGCGTGGCTGTGCCGGTGGGCGTGGACGATCACATGTCCTCCTGTGTATCTTCATCATGCCCTCGTCTCATCACACACTTCTACATCAAGAAGATGACAGAGGCAGAGCTGAAAGAGATAGAGAGAGCGGCTGTAGCCTCCGCCACTGACCACGGTTTAGAGGTATTGGGTATGGTGCGTGTGCCGCTCTACTTCCTGAAGAAGGGAGGTGGTCTCCCCTACTTCCTTTCCCACTCGTTCATCAGTAACTCTCGGGCGCAGCTGCTCTCTGCCCTGCGCCACTGCAGGCTGCTGTCTCAAGGGGAGCTGAAGGAGGCTGTGAGGCAAGCGGAGCAGATGAGACGCACACACAGCGATGATCCTCGCTGACATCAGTTTACACAGCAGTGCCTTTTCACCCCGTGGCCATTATTACAGCTACATCACATTAGCCCAACCCCACCAGAGCTGCTAGAAACTCCCTCCTGTCCTCACACTGCCCTCAGTTCCTCATCCGGGCATGTACAGTGTGTCTTCTCTGTAGATATCCTAACATTTCAAGACCCCACATTCACTTGGTAGATCGTTTTGTTTAATAACGTTTGACTTATTTGACAATATTTCCTGCTTTACGCTACTAGTGAATCACTAGTGAAAACAAATACGACTCTGCGATGTTGTAATTACACCTCATTTACTAGTTAAATTGTTAATAATGCGTatgatttgtgtgtgcatgtgtgatttattatttatgtagatGCATATGAGTTACCTGATTGTTATTCTCATGTTTGCTATTTAAATTAGTTCTGTTTATGAGAGATATGTGCATGAAGAATTGAGCAAGCTGGTTGGGCTAATAAACAGCATATAAGA
>TCONS_00043964
AAGCGTTGGCCCGTCAGGGCTACAGACACGCGTGTCATGTCATGCTGTATGGAGACTCCAGTGCCAAACTCTTCGGGAAAATCCCAATCAAACATATTGTTTTGgTTAGTGAACCCGTCCGAGGAAACGCTGGAGGCGGGGCTTAGCAGAGAGCTACACGAAGAAGTGGGCGTGGCTGTGCCGGTGGGCGTGGACGATCACATGTCCTCCTGTGTATCTTCATCATGCCCTCGTCTCATCACACACTTCTACATCAAGAAGATGACAGAGGCAGAGCTGAAAGAGATAGAGAGAGCGGCTGTAGCCTCCGCCACTGACCACGGTTTAGAGGTATTGGGTATGGTGCGTGTGCCGCTCTACTTCCTGAAGAAGGGAGGTGGTCTCCCCTACTTCCTTTCCCACTCGTTCATCAGTAACTCTCGGGCGCAGCTGCTCTCTGCCCTGCGCCACTGCAGGCTGCTGTCTCAAGGGGAGCTGAAGGAGGCTGTGAGGCAAGCGGAGCAGATGAGACGCACACACAGCGATGATCCTCGCTGACAT

Function

symbol description
zgc:103759 Predicted to enable several functions, including m7G(5')pppN diphosphatase activity; nucleotide phosphatase activity, acting on free nucleotides; and phosphodiesterase decapping endonuclease activity. Predicted to be involved in mRNA catabolic process and sno(s)RNA catabolic process. Predicted to be active in nucleus. Orthologous to human NUDT16 (nudix hydrolase 16).

GO:

id name namespace
GO:0016077 snoRNA catabolic process biological_process
GO:0006402 mRNA catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0050072 m7G(5')pppN diphosphatase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:1990174 phosphodiesterase decapping endonuclease activity molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0098519 nucleotide phosphatase activity, acting on free nucleotides molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-100 Predicted to enable several functions, including m7G(5')pppN diphosphatase activity; nucleotide phosphatase activity, acting on free nucleotides; and phosphodiesterase decapping endonuclease activity. Predicted to be involved in mRNA catabolic process and sno(s)RNA catabolic process. Predicted to be active in nucleus. Orthologous to human NUDT16 (nudix hydrolase 16).

Ensembl:

ensembl_id ENSDARG00000019503

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043962 False 1155 mRNA 0.47 5 18702516 18707568
TCONS_00043963 False 1143 mRNA 0.48 4 18702518 18707494
TCONS_00043964 True 540 mRNA 0.56 3 18703004 18707418

Neighbor

gene id symbol gene type direction distance location
XLOC_022268 arhgap4b coding downstream 33680 18615992 ~ 18668836 (-)
XLOC_022267 CT027756.1 coding downstream 90095 18611127 ~ 18612421 (-)
XLOC_022266 CT027756.2 coding downstream 91506 18610016 ~ 18611010 (-)
XLOC_022265 zgc:158296 coding downstream 93041 18603187 ~ 18609475 (-)
XLOC_022264 ikbkg coding downstream 104807 18574221 ~ 18597709 (-)
XLOC_022270 trpc4apb coding upstream 51974 18759542 ~ 18777957 (-)
XLOC_022271 nsfl1c coding upstream 83090 18790658 ~ 18805655 (-)
XLOC_022272 NA coding upstream 161649 18869217 ~ 18898522 (-)
XLOC_022273 NA coding upstream 197106 18904674 ~ 18913159 (-)
XLOC_022274 NA coding upstream 222345 18929913 ~ 18942050 (-)
XLOC_022261 NA non-coding downstream 286644 18386787 ~ 18415872 (-)
XLOC_022260 NA non-coding downstream 317348 18382297 ~ 18385168 (-)
XLOC_022256 NA non-coding downstream 628097 18073715 ~ 18074419 (-)
XLOC_022283 CR388168.3 non-coding upstream 601228 19308796 ~ 19308910 (-)

Expression


Co-expression Network