XLOC_022265 (zgc:158296)


Basic Information

Item Value
gene id XLOC_022265
gene name zgc:158296
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 18603187 ~ 18609475 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043957
CTGTTGGTGCAGACACAGAGTGAGGTGCAGACGTCCCGTTCACGCTTTCTGATGTCCAGTAATACTTTAATACAGAGCACATATTCAATTGTTAGATGTGGATGACATGACAGTTTATGGCGTTTGATGGTGTCTGCCAAATAGATCTGAATAGACATACATTGCTGCTGAAGTTACTTTTGTTGACTTGCACAGGattactttttgttttgtatacCGGAGCTGTTGGATAGGTCCAATATGATGTCAGACGAGTATTTGGTGGAATGTAACATTAATGACGAcgatgaggaggaggatgaagaggaaGATTACGTTGTGAAGAAGATCTACgagtctcctcctcctcctccacagtTTTCCTCAAGCACATCAGTAGACATCAGGGATCCGTGCGGCATCAACAAACACTTGAAGGTAGAGTTCAGCGATGTTTTGGCGGAGCCCGCATCCACACGCAGCTATGACCGGGTGTGGGTTTACAGTGGCATCGGCTTCGAGTCCGCGCGGCTGTGGAGTTACCGCTGCCTGAGCGCGATCTGTGCGGTTCCGCTCTCCTGTCTCTGCGGCTGCCTGTTCGCCCTGCTGGCCTGCATGCACATCTGGTGTGTAATGCCGTGTATTCAGGTGTGCCATTCCTGCCTGCCCTGTGTGAGGTCACTGTGGATGAGTTTAGTAAACATCTTCATCGCTCCGCTCTTAACATCTGTGGCTCACTGTTGCAGTGGAGTTTATGTGCTTTTCTCCAAAGAGTGAACAAACACGAGGAGTTTGGGGAAGCTTGTAAAACTGTCCatcacttaaaaacaaacaaaacatcaacCCTGCTTTTGTGAAGTTACaaaacaactgtttaaaccaTTCAAAGAAGGGGATTACATGTTAttatatagatttgtttttgatAATCTATTACATGTTAAATGATCTTTGGTACACATTTTTGTGTGATAAAATTTGCATGTGCTTTAAAGTATGTCCAACATGCAGATAATAACAGCCTCTTTTTTCATATGttctgattgttttgttttgctgtttgataTGTGAAATGTTCATTGATTATATATGAATCCAGATTAtttgaaacaaacacacatttgtaTTGTATCTACAAAATTTACAATAAACACTAAGAGGGATTAAACACCAAATAA

Function

symbol description
zgc:158296 Predicted to enable molecular adaptor activity. Predicted to be involved in caveola assembly; cell differentiation; and regulation of cytosolic calcium ion concentration. Predicted to be located in Golgi membrane and plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Predicted to colocalize with caveola; focal adhesion; and sarcolemma. Is expressed in liver; myotome; and somite.

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0051480 regulation of cytosolic calcium ion concentration biological_process
GO:0070836 caveola assembly biological_process
GO:0042383 sarcolemma cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0005901 caveola cellular_component
GO:0005925 focal adhesion cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0060090 molecular adaptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-1272 Predicted to enable molecular adaptor activity. Predicted to be involved in caveola assembly; cell differentiation; and regulation of cytosolic calcium ion concentration. Predicted to be located in Golgi membrane and plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Predicted to colocalize with caveola; focal adhesion; and sarcolemma. Is expressed in liver; myotome; and somite.

Ensembl:

ensembl_id ENSDARG00000070923

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043957 True 1157 mRNA 0.42 4 18603187 18609475

Neighbor

gene id symbol gene type direction distance location
XLOC_022264 ikbkg coding downstream 5478 18574221 ~ 18597709 (-)
XLOC_022263 ssr4 coding downstream 30502 18569291 ~ 18572685 (-)
XLOC_022262 sephs2 coding downstream 34665 18558209 ~ 18568522 (-)
XLOC_022261 NA coding downstream 187315 18386787 ~ 18415872 (-)
XLOC_022260 NA coding downstream 218019 18382297 ~ 18385168 (-)
XLOC_022266 CT027756.2 coding upstream 541 18610016 ~ 18611010 (-)
XLOC_022267 CT027756.1 coding upstream 1652 18611127 ~ 18612421 (-)
XLOC_022268 arhgap4b coding upstream 6517 18615992 ~ 18668836 (-)
XLOC_022269 zgc:103759 coding upstream 93041 18702516 ~ 18707568 (-)
XLOC_022270 trpc4apb coding upstream 150067 18759542 ~ 18777957 (-)
XLOC_022256 NA non-coding downstream 528768 18073715 ~ 18074419 (-)
XLOC_022255 dre-mir-135c-2 non-coding downstream 539888 18063173 ~ 18063299 (-)
XLOC_022251 NA non-coding downstream 717336 17881023 ~ 17885851 (-)
XLOC_022272 NA non-coding upstream 259742 18869217 ~ 18898522 (-)
XLOC_022273 NA non-coding upstream 295199 18904674 ~ 18913159 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_05313109_05313728 NA coding CI01000001 null 5313056 ~ 5313728 (-)