XLOC_022251


Basic Information

Item Value
gene id XLOC_022251
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 17881023 ~ 17885851 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044981
gtttaattagagttagaattaaactgtgcagagctcggGCCCTCCAGGATCTGGCTTTGACACTTCTGCCTTAAACCAGTCTGCCATAGACTGACATAGATGACTTACTGTTGTATCCAGCATTTCCTCTGCTGTTCTTGTCATTGTTTTGGTTTGGTCAATTCGCCGGCCAGAGCTCATACCCAGGTAGCTGCCCACAAAGCCAGGTATAGTCGAGGGATTCAAAAGACAATCAAGAAAGGACACTGATTTATTCTGGATGAGCTTGGGTGAACGTCTGTAATGTTCCAGCTCTCCATCTAGCTGGTCATTCTCTGAGGCTGCAGAACCATTGAAGTACTGGTTGATGTGTTTGGCCATATGAGTGTAGTTTTCCCCAAAGCGTGTGGTGAGGCTGCTCATGTGGAACAAGCCTGGAGATTTTGGATGAAGAATTGGAGTATGGTCTTTTGTTTTAGAATCAGAAGTCTTCTGGGTGTTTGTCTTGGTATGTGGCATCTGATGTCCTCTATCGGTTACTTTTGCTCCAAAGTATCGATTGATGTGACGGGCAAAGTGAAGGTATCCTTCTTCCCATGAACTACATATATTGTCATCAATCGGTGGTTTCAATCTCTGGGTAGCTTCCTCATGAATAACACTTTTACTACTCATAACTACTCTTTCCATACTCATTCTAGACTTTCTGAAGCCTTCATCTGGCGATACGTTAATGTGAGTTTGCTTTGGTGAAAACACGGTGTTAATGTGATTGGCCACATAGCTGTAACTTTCCCCAAATCGATTGGCTAAGGAGCTGATGTGGAAGAGCTGTAGTCCAGGATAAGCTTCTTGAACCTGCTCTATGCTCTCTCCAGAGCATCTGTCTCTCTGAACTCGTCTCGGTGGTCTGGTTAGTGATTCATCCTGCTCATAATCCATCACTGATACCCGTTTCTGCCTGAAATACAAGTTAACATGCCTAGATAGACGATTATAAGACTCTCCTAATCTCACTCCGAATACATCCAGCTGAAAAGCAGTCCTGCCATTCTGGTAAACTCCAATGGGTGCTTCTGCTTTGAATGTCTCTCTGTTGGAGGTTGAGTAACATCTGTACATCTGAGGACCTAGTTTGTTCTCATATTTCATATTACTAGTAATGGCTCCTAAGAGTTTGACAGTATTCATTGATCTGTGAGATTTCAGAGAGATTCTCCTTGAAGATTGAGGTGAAGAGAAGAAGCTACATGACCTATGAGGCCTCCTGACAAAGTGAGCGTCCAGTGGTGCAGTTCTCTCTGCCTGTCCACTTCAGTCTATTCCGTGCAAACACCCCATAGGCTTGATCCACTACAGGCCTAATCAGTGGAAAAGACAGGAATCTGCCAAGCCAACCCAAACCAACCGCGCTGTACATCACTGTAAATGCTGGCACACCATGGTGAATCTGTCCTCAAAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044981 True 1442 lncRNA 0.44 2 17881023 17885851

Neighbor

gene id symbol gene type direction distance location
XLOC_022250 tfip11 coding downstream 14923 17847040 ~ 17866100 (-)
XLOC_022247 NA coding downstream 41825 17657994 ~ 17839198 (-)
XLOC_022249 CR381647.5 coding downstream 60268 17782972 ~ 17820755 (-)
XLOC_022248 CU570795.1 coding downstream 198091 17682818 ~ 17682932 (-)
XLOC_022246 bhlhe23 coding downstream 223675 17655790 ~ 17657348 (-)
XLOC_022252 pm20d1.2 coding upstream 107940 17993791 ~ 18017946 (-)
XLOC_022253 pm20d1.1 coding upstream 135077 18020928 ~ 18030399 (-)
XLOC_022254 zgc:92287 coding upstream 146718 18032569 ~ 18057958 (-)
XLOC_022255 dre-mir-135c-2 coding upstream 177322 18063173 ~ 18063299 (-)
XLOC_022256 NA coding upstream 187864 18073715 ~ 18074419 (-)
XLOC_022241 BX649300.1 non-coding downstream 525321 17354153 ~ 17355702 (-)
XLOC_022240 BX927275.3 non-coding downstream 704805 17176104 ~ 17176218 (-)
XLOC_022239 CR318674.1 non-coding downstream 834639 17044294 ~ 17046384 (-)
XLOC_022260 NA non-coding upstream 496446 18382297 ~ 18385168 (-)
XLOC_022261 NA non-coding upstream 500936 18386787 ~ 18415872 (-)
XLOC_022266 CT027756.2 non-coding upstream 724165 18610016 ~ 18611010 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G16376 NA non-coding CI01000001 null 4962467 ~ 4964363 (-)