Fish Transcriptome and Expression Database

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model fish

XLOC_022249 (CR381647.5)

Basic Information

Item	Value
gene id	XLOC_022249
gene name	CR381647.5
gene type	coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007134.7
NCBI id	CM002907.2
chromosome length	46223584
location	17782972 ~ 17820755 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043922
aaagagagagCCGTGAAAAAGCCATTAGTAATGCTACAgaagcaggtgtgtgttggcgaagtgcatgcaAACAAAGAAAAGTTAGGACAGGTCTTATATAAGTCTTGTTATGCCGAGTCAGAAGTGAGTACAACGTTTGAAATCTATACGGCAGGAAACCATTTGGAGGAACGAGCAATAGAAGCATCA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000112772

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00043922	True	189	mRNA	0.42	9	17782972	17820755

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_022248	CU570795.1	coding	downstream	100040	17682818 ~ 17682932 (-)
XLOC_022246	bhlhe23	coding	downstream	125624	17655790 ~ 17657348 (-)
XLOC_022245	dnajc5ab	coding	downstream	273316	17472702 ~ 17509656 (-)
XLOC_022244	trim101	coding	downstream	312826	17454691 ~ 17470146 (-)
XLOC_022243	tpd52l2b	coding	downstream	331708	17431345 ~ 17451264 (-)
XLOC_022250	tfip11	coding	upstream	26285	17847040 ~ 17866100 (-)
XLOC_022251	NA	coding	upstream	60268	17881023 ~ 17885851 (-)
XLOC_022252	pm20d1.2	coding	upstream	173036	17993791 ~ 18017946 (-)
XLOC_022253	pm20d1.1	coding	upstream	200173	18020928 ~ 18030399 (-)
XLOC_022254	zgc:92287	coding	upstream	211814	18032569 ~ 18057958 (-)
XLOC_022241	BX649300.1	non-coding	downstream	427270	17354153 ~ 17355702 (-)
XLOC_022240	BX927275.3	non-coding	downstream	606754	17176104 ~ 17176218 (-)
XLOC_022239	CR318674.1	non-coding	downstream	736588	17044294 ~ 17046384 (-)
XLOC_022237	NA	non-coding	downstream	778189	16961269 ~ 17004783 (-)
XLOC_022255	dre-mir-135c-2	non-coding	upstream	242418	18063173 ~ 18063299 (-)
XLOC_022256	NA	non-coding	upstream	252960	18073715 ~ 18074419 (-)
XLOC_022260	NA	non-coding	upstream	561542	18382297 ~ 18385168 (-)
XLOC_022261	NA	non-coding	upstream	566032	18386787 ~ 18415872 (-)

Expression

Co-expression Network