XLOC_022246 (bhlhe23)


Basic Information

Item Value
gene id XLOC_022246
gene name bhlhe23
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 17655790 ~ 17657348 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043918
GTCTAAAGTGCACGCAACATCACTGTCTGCGCGGAGGAGCGGAACACGAGTGCTCGACGTGATAGGGGAAGAAAGATCTCTATCAAAAAGTGTCTTCATTTTCAACAGCCCTTTGAAGGACACCCACGAAACAGAAGACGGGGAAGCGCGAGCAAGCTTTCAGGAGCGCGCGCGCCAAAGTTTTCCATCCGgtccgtttttttgttttcattttatttattttctccaaAATGAATGTCGGCGACGAGAACTTGCTGAAATCGATCAGCAACGATACCTTGCTGGACCTGACGCAGCGCTACGGACAGTCCGCCTTCGGTTTCGGCGCTGGCCATGGTGCTGGAAGTCCTGGCCGCTTCTCGCTCACACCTGCCGCGGATTTCCTCTCCGGTCAAACTGGAAAGTCGAACGAAAGTGGCGGTGAGCAGACCAGCGACGAAGACGACGGCTTCGACAACCTCGAGTCCCGTAAGCGAGGCGCGGGCTTCGACGAAGAGAAGCACCCGGGCTCTCTCACCAAGAAGTCCAAGGAGCAGAGATCTCTCCGGCTGAGCATCAACGCGCGCGAGCGGAGACGCATGCACGACCTCAATGACGCGCTGGACGGTCTGAGATCTGTGATTCCTTACGCGCACAGCCCGTCCGTGAGAAAACTCTCTAAAATTGCAACTTTGCTTCTTGCAAAAAACTACATCCTAATGCAGGCGCAGGCGCTGGAGGAGATGCGCCGGTTGGTGGCTTATCTTAACCAAGGACAGACTATAACTTCGCCGATTCCCACCGCGCTCGCGCCTTTCGGACAAGCGGCCGTGTATCCGTTTTCGAGCACAGCACTGGCCACCTGCGCGGAGAAATGCAACTCGTTCTCCGGCACCCCGTCCAACCTGTTCAAACACTGCAACGATAAGCCTTGACTTCCACTCGCTGAACTCTTCCCGCTTCCTTATGTTGGTCGAACTGTTTTGTTGGGACTGGGCTTATAGGTCTGACTCAAAACTCCTGCTTTGTGTCAAAATAAGTGCGATGTGTCATCCAAATTTATTAGATAATGTGAAATAAATAATCAAGAGACACGGAATTACTGAAACAAGCTTATAAACCCCTCAAATTTAAAGCCTTTCTTCCTTTTCCCAAATGAAGGATTTAAAAGATTatttgtgtgaaaacaaacaaacaaaagaaattgcTTATTATTGCTCACAGTTTGCGAAGGATTTCTTTTTTAAGTCAAAGCTTTCGGTTTCATCGGTATTGGTCAACTATGCAATTTACAATTGCccacaataaacaatagtttcttttttttttaagttagtcTGAAATGAATATACGGATGATATACTCCATCAGTGTTTTAGGGAAAAACGTAACATCCTCAGATGCTTGGCCTATaaatcgtttatttatttatttattattttttgttattgcacAGTTCACTTGATTGTATTGTACAACTGTGAAGAACTACTTGATCAAAGGATTTTGACCTTGTTGCGACATGCGTTTCATACTGTATATTGTTTATATGTCTttataattaaaacatatatctatga

Function

symbol description
bhlhe23 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in neuron differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cell development and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in basal plate midbrain region; brain; neurons; and retinal inner nuclear layer. Orthologous to human BHLHE23 (basic helix-loop-helix family member e23).

GO:

id name namespace
GO:0048468 cell development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030182 neuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050913-22 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in neuron differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cell development and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in basal plate midbrain region; brain; neurons; and retinal inner nuclear layer. Orthologous to human BHLHE23 (basic helix-loop-helix family member e23).

Ensembl:

ensembl_id ENSDARG00000037588

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043918 True 1559 mRNA 0.46 1 17655790 17657348

Neighbor

gene id symbol gene type direction distance location
XLOC_022245 dnajc5ab coding downstream 146134 17472702 ~ 17509656 (-)
XLOC_022244 trim101 coding downstream 185644 17454691 ~ 17470146 (-)
XLOC_022243 tpd52l2b coding downstream 204526 17431345 ~ 17451264 (-)
XLOC_022242 ppdpfb coding downstream 226015 17427838 ~ 17429775 (-)
XLOC_022241 BX649300.1 coding downstream 300088 17354153 ~ 17355702 (-)
XLOC_022247 NA coding upstream 646 17657994 ~ 17839198 (-)
XLOC_022248 CU570795.1 coding upstream 25470 17682818 ~ 17682932 (-)
XLOC_022249 CR381647.5 coding upstream 125624 17782972 ~ 17820755 (-)
XLOC_022250 tfip11 coding upstream 189692 17847040 ~ 17866100 (-)
XLOC_022251 NA coding upstream 223675 17881023 ~ 17885851 (-)
XLOC_022240 BX927275.3 non-coding downstream 479572 17176104 ~ 17176218 (-)
XLOC_022239 CR318674.1 non-coding downstream 609406 17044294 ~ 17046384 (-)
XLOC_022237 NA non-coding downstream 651007 16961269 ~ 17004783 (-)
XLOC_022235 NA non-coding downstream 802843 16850836 ~ 16852947 (-)
XLOC_022255 dre-mir-135c-2 non-coding upstream 405825 18063173 ~ 18063299 (-)
XLOC_022256 NA non-coding upstream 416367 18073715 ~ 18074419 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_04846242_04846925 BHLHE23 coding CI01000001 null 4845807 ~ 4847700 (-)
bowfin (Amia calva) AMCG00008097 bhlhe23,LOC102799046,LOC107737661,LOC107560898 coding CM030123.1 CM030123.1 42212372 ~ 42213085 (+)