XLOC_022264 (ikbkg)


Basic Information

Item Value
gene id XLOC_022264
gene name ikbkg
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 18574221 ~ 18597709 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043952
attaaaatctaaataaattcaaatgaatTGCATGAACTAATGTCCTCTCCCTCCTGTTGTCCAAGCGTTTGATGTGAATGTTGTTTCCTCACAGAGCTCGCATTGAAGAGATGCAGCAGAGACACTTGGAGGACTACAGGCCTCGACCTCACCCGCCACCTCCAGCTGCACCTTTCCCAGGGCCAGCGATGTTCAATTCAGCCCAGCCTCCATCTGCACGCAGAAGAGACGAAGATCAAGAAGAGCTGCCGGATTACAGATGCCCCAAATGCATGTACAAGGCACCAGACATGGATACGCTGCAGATTCACGTCATGGACTGCATCCAGTAAGAACAGCAGACGTTCAGATTGTTTATTCCCCACAACTCGGTGGACTCTAACAACAGAAAATCAACAACATCTATCTTTGAGGACTTTGAACAGTGAATCGTGCTACAGATGGACTTAAAGTAGACCTATCGCAGATGTTTTTATCATGTGGCCATAGAGCCACTACCATGTTCCCGTACACTTAGTGTGTTTatctcttttaaaaacaaaaaagctcaTCTGTACTGCCTTTCTGTGACAGCATAGTGTAATGTACTGCACGTGTGAATGTTTGTCTGCTTTTCGTCTGCACACATCTGACAGTGACAATGTTTCCTTTATACCAGTGGTATTTGTTTCTCTGGATGTGCGCACTCTTGAGGATTCATGCCcgcctgtattattattattaatattattgttattattgtgtaTTATCAGCCAAAGtgaatatgagaaaaaaaaatctactttgtaCAGACTATTGTTGTGAAGAGATTCAATAAAAGTATGAATATT
>TCONS_00043953
GGGGATTTCCTCGACAGTGTGGGCACCTGTCTGAACTCTTCTAGACGTTTTCATTTGATATACTTTATCAATCTCGAATTCTCGATTCAGACTTTCCAGCTCGGTGGTGTTGAAGATGTTGGCCTACCTGAGCGTCCGTGGCTGACTTTAAACCTGCCTGTGTTTCCTCGGCGGAAGACCGACAGACAGTGAATCTGTGCTAGCGCAGAGTCAAAACACTGTTAACGGCGTAAAGAAGGATCATGGTCCAGCCGCAGCCGTCCGGTGGCTGCACTCTGCAATATGAGTTGAACGGAGAAGAGACCGCAGGTTCAGAAGGTCAAGTCTCACTCATGGCCAGTTCACAGGGCTCATTGAGGGTCCCTGCTGATTTAGCTGGAAATGAAATCGTTCAGAAACTCATAACGGACAATCATCAGCTACGTGAGGCTCTGAAACGAAGCAATGATGCCCTCAAAGAGAGATGTGAAGAGATGGAGGGCTGGCAGAGGAGGTCAAGAGAAGAGCGAGAGTTCCTGAGCTGTAGATTTCGTGAGGCCAGAGAGTTAGTGCAGCGACTGGCCCAGGAAAACCAGAGCCTTTTAGGACAACTAAACCTGAGTGTCAGTCAAGCAGGGAGTCTGGGCATCTCCAAAGAAACTGGAAGTCAAGACCAAGAGCTGAAGTGCACCAATGCAGAGAAGAATGTCCTCATAGACTCACCAgaaGTATTAAATGCAGCTGTACTGACAGAATGCGCTGAAGGAGACACTGACAGACACACAATGCCTCAAAGTTTGCCTGCTGTGGGCTCTAATGATTTCCTGAAACTACTGAAAAGCCACAAAGAGAAGCTGGAGGAAGGCATGCGGGCTTTAAGGAGGAAGAATGAGGAGCTGGAGAAGGAGAAAGCAGAgaacgagaaagagagagagaatctcCTCGCTGCACTGGAGCAGTTGCGCTCCAAGCTGTCTCAGAATGTTGGGGTTACTGAAGAGTCAGTCCCGCCGACGTGTGCTGTCACTGTTCCTGCAGAAAGGTACAGGGAGCTGCAGGAGAAGCTGGATTGTCTTCAGAAGAATTCTTTTCAGAGAGACAGAACTGAGGCTCTCCTTAAACAGAAGGAGAAAGAGTTTGTTCAGGTACAAAAGGACAGTGAAGCGCTGAGATCGCAAGTAACGTCGCTTCTCGGAGAGCTGAACGAACGACAAAACTGGCTGGAGAAGAGCGAAGCAGAGAAACGAACCTTAGAAGACAAGCTGGTCACGAAGAGTGAGCGTCTGCAGACTGTAGAGAGAGAGATGGAGCAGCAGAAGAAGCAGCACAGCGTGACGGTAGACAATCTTTTACTGAAGACACAGAATCTGGAAGCCGCACTGAAGAACGAGAGGCTCGTCATAGTGGAGGAGAGGAGGAAGCTGGCCCAGCTCCAGCATGCATACACGTGTCTGTTTCAGGATTATGACAACAAACTTAAAAGCGAAAAACAAGCCAATCACAGGGGTGGAGAGACGGATACCCTTGCTAACAGGTTAGGGGAGGCTGAGAAAGCACTGGCCCTCAAACAGGAGCACATTGATAAACTCAAGGAGGAAATGGAGCAGCTGAGAGCTAAATTAGAGACCATACCGGTGCTGAACCATCAGgCAGAGATCTATAAGATGGACTTCTTGGCTGAGAGGGAAGCCAGAGAGAAACTCAATCAAAAGAAGGAAGAGTTGCAGGAGGATCTGAATAAGGCATTGGTCGAGATTGAAAGATTCAAGCAAGAAAGAACCTCACGAGCTCGCATTGAAGAGATGCAGCAGAGACACTTGGAGGACTACAGGCCTCGACCTCACCCGCCACCTCCAGCTGCACCTTTCCCAGGGCCAGCGATGTTCAATTCAGCCCAGCCTCCATCTGCACGCAGAAGAGACGAAGATCAAGAAGAGCTGCCGGATTACAGATGCCCCAAATGCATGTACAAGGCACCAGACATGGATACGCTGCAGATTCACGTCATGGACTGCATCCAGTAAGAACAGCAGACGTTCAGATTGTTTATTCCCCACAACTCGGTGGACTCTAACAACAGAAAATCAACAACATCTATCTTTGAGGACTTTGAACAGTGAATCGTGCTACAGATGGACTTAAAGTAGACCTATCGCAGATGTTTTTATCATGTGGCCATAGAGCCACTACCATGTTCCCGTACACTTAGTGTGTTTatctcttttaaaaacaaaaaagctcaTCTGTACTGCCTTTCTGTGACAGCATAGTGTAATGTACTGCACGTGTGAATGTTTGTCTGCTTTTCGTCTGCACACATCTGACAGTGACAATGTTTCCTTTATACCAGTGGTATTTGTTTCTCTGGATGTGCGCACTCTTGAGGATTCATGCCcgcctgtattattattattaatattattgttattattgtgtaTTATCAGCCAAAGtgaatatgagaaaaaaaaa
>TCONS_00043954
ATCATGGTCCAGCCGCAGCCGTCCGGTGGCTGCACTCTGCAATATGAGTTGAACGGAGAAGAGACCGCAGGTTCAGAAGGTCAAGTCTCACTCATGGCCAGTTCACAGGGCTCATTGAGGGTCCCTGCTGATTTAGCTGGAAATGAAATCGTTCAGAAACTCATAACGGACAATCATCAGCTACGTGAGGCTCTGAAACGAAGCAATGATGCCCTCAAAGAGAGATGTGAAGAGATGGAGGGCTGGCAGAGGAGGTCAAGAGAAGAGCGAGAGTTCCTGAGCTGTAGATTTCGTGAGGCCAGAGAGTTAGTGCAGCGACTGGCCCAGGAAAACCAGAGCCTTTTAGGACAACTAAACCTGAGTGTCAGTCAAGCAGGGAGTCTGGGCATCTCCAAAGAAACTGGAAGTCAAGACCAAGAGCTGAAGTGCACCAATGCAGAGAAGAATGTCCTCATAGACTCACCAgaaGTATTAAATGCAGCTGTACTGACAGAATGCGCTGAAGGAGACACTGACAGACACACAATGCCTCAAAGTTTGCCTGCTGTGGGCTCTAATGATTTCCTGAAACTACTGAAAAGCCACAAAGAGAAGCTGGAGGAAGGCATGCGGGCTTTAAGGAGGAAGAATGAGGAGCTGGAGAAGGAGAAAGCAGAgaacgagaaagagagagagaatctcCTCGCTGCACTGGAGCAGTTGCGCTCCAAGCTGTCTCAGAATGTTGGGGTTACTGAAGAGTCAGTCCCGCCGACGTGTGCTGTCACTGTTCCTGCAGAAAGCTCTCACTTGGCTAACATAACTGAGCAGCTTCAGGCCACACAAGGCAGGTACAGGGAGCTGCAGGAGAAGCTGGATTGTCTTCAGAAGAATTCTTTTCAGAGAGACAGAACTGAGGCTCTCCTTAAACAGAAGGAGAAAGAGTTTGTTCAGGTACAAAAGGACAGTGAAGCGCTGAGATCGCAAGTAACGTCGCTTCTCGGAGAGCTGAACGAACGACAAAACTGGCTGGAGAAGAGCGAAGCAGAGAAACGAACCTTAGAAGACAAGCTGGTCACGAAGAGTGAGCGTCTGCAGACTGTAGAGAGAGAGATGGAGCAGCAGAAGAAGCAGCACAGCGTGACGGTAGACAATCTTTTACTGAAGACACAGAATCTGGAAGCCGCACTGAAGAACGAGAGGCTCGTCATAGTGGAGGAGAGGAGGAAGCTGGCCCAGCTCCAGCATGCATACACGTGTCTGTTTCAGGATTATGACAACAAACTTAAAAGCGAAAAACAAGCCAATCACAGGGGTGGAGAGACGGATACCCTTGCTAACAGGTTAGGGGAGGCTGAGAAAGCACTGGCCCTCAAACAGGAGCACATTGATAAACTCAAGGAGGAAATGGAGCAGCTGAGAGCTAAATTAGAGACCATACCGGTGCTGAACCATCAGgCAGAGATCTATAAGATGGACTTCTTGGCTGAGAGGGAAGCCAGAGAGAAACTCAATCAAAAGAAGGAAGAGTTGCAGGAGGATCTGAATAAGGCATTGGTCGAGATTGAAAGATTCAAGCAAGAAAGAACCTCACGAGCTCGCATTGAAGAGATGCAGCAGAGACACTTGGAGGACTACAGGCCTCGACCTCACCCGCCACCTCCAGCTGCACCTTTCCCAGGGCCAGCGATGTTCAATTCAGCCCAGCCTCCATCTGCACGCAGAAGAGACGAAGATCAAGAAGAGCTGCCGGATTACAGATGCCCCAAATGCATGTACAAGGCACCAGACATGGATACGCTGCAGATTCACGTCATGGACTGCATCCAGTAA
>TCONS_00043955
TCAGGATCATGGTCCAGCCGCAGCCGTCCGGTGGCTGCACTCTGCAATATGAGTTGAACGGAGAAGAGACCGCAGGTTCAGAAGGTCAAGTCTCACTCATGGCCAGTTCACAGGGCTCATTGAGGGTCCCTGCTGATTTAGCTGGAAATGAAATCGTTCAGAAACTCATAACGGACAATCATCAGCTACGTGAGGCTCTGAAACGAAGCAATGATGCCCTCAAAGAGAGATGTGAAGAGATGGAGGGCTGGCAGAGGAGGTCAAGAGAAGAGCGAGAGTTCCTGAGCTGTAGATTTCGTGAGGCCAGAGAGTTAGTGCAGCGACTGGCCCAGGAAAACCAGAGCCTTTTAGGACAACTAAACCTGAGTGTCAGTCAAGCAGGGAGTCTGGGCATCTCCAAAGAAACTGGAAGTCAAGACCAAGAGCTGAAGTGCACCAATGCAGAGAAGAATGTCCTCATAGACTCACCAgaaGTATTAAATGCAGCTGTACTGACAGAATGCGCTGAAGGAGACACTGACAGACACACAATGCCTCAAAGTTTGCCTGCTGTGGGCTCTAATGATTTCCTGAAACTACTGAAAAGCCACAAAGAGAAGCTGGAGGAAGGCATGCGGGCTTTAAGGAGGAAGAATGAGGAGCTGGAGAAGGAGAAAGCAGAgaacgagaaagagagagagaatctcCTCGCTGCACTGGAGCAGTTGCGCTCCAAGCTGTCTCAGAATGTTGGGGTTACTGAAGAGTCAGTCCCGCCGACGTGTGCTGTCACTGTTCCTGCAGAAAGGTACAGGGAGCTGCAGGAGAAGCTGGATTGTCTTCAGAAGAATTCTTTTCAGAGAGACAGAACTGAGGCTCTCCTTAAACAGAAGGAGAAAGAGTTTGTTCAGGTACAAAAGGACAGTGAAGCGCTGAGATCGCAAGTAACGTCGCTTCTCGGAGAGCTGAACGAACGACAAAACTGGCTGGAGAAGAGCGAAGCAGAGAAACGAACCTTAGAAGACAAGCTGGTCACGAAGAGTGAGCGTCTGCAGACTGTAGAGAGAGAGATGGAGCAGCAGAAGAAGCAGCACAGCGTGACGGTAGACAATCTTTTACTGAAGACACAGAATCTGGAAGCCGCACTGAAGAACGAGAGGCTCGTCATAGTGGAGGAGAGGAGGAAGCTGGCCCAGCTCCAGCATGCATACACGTGTCTGTTTCAGGATTATGACAACAAACTTAAAAGCGAAAAACAAGCCAATCACAGGGGTGGAGAGACGGATACCCTTGCTAACAGGTTAGGGGAGGCTGAGAAAGCACTGGCCCTCAAACAGGAGCACATTGATAAACTCAAGGAGGAAATGGAGCAGCTGAGAGCTAAATTAGAGACCATACCGGTGCTGAACCATCAGgCAGAGATCTATAAGATGGACTTCTTGGCTGAGAGGGAAGCCAGAGAGAAACTCAATCAAAAGAAGGAAGAGTTGCAGGAGGATCTGAATAAGGCATTGGTCGAGATTGAAAGATTCAAGCAAGAAAGAACCTCACGAGCTCGCATTGAAGAGATGCAGCAGAGACACTTGGAGGACTACAGGCCTCGACCTCACCCGCCACCTCCAGCTGCACCTTTCCCAGGGCCAGCGATGTTCAATTCAGCCCAGCCTCCATCTGCACGCAGAAGAGACGAAGATCAAGAAGAGCTGCCGGATTACAGATGCCCCAAATGCATGTACAAGGCACCAGACATGGATACGCTGCAGATTCACGTCATGGACTGCATCCAGTAA
>TCONS_00043956
ACACGGGGGATTTCCTCGACAGTGTGGGCACCTGTCTGAACTCTTCTAGACGTTTTCATTTGATATACTTTATCAATCTCGAATTCTCGATTCAGACTTTCCAGCTCGGTGGTGTTGAAGATGTTGGCCTACCTGAGCGTCCGTGGCTGACTTTAAACCTGCCTGTGTTTCCTCGGCGGAAGACCGACAGACAGTGAATCTGTGCTAGCGCAGAGTCAAAACACTGTTAACGGCGTAAAGAAGGATCATGGTCCAGCCGCAGCCGTCCGGTGGCTGCACTCTGCAATATGAGTTGAACGGAGAAGAGACCGCAGGTTCAGAAGGTCAAGTCTCACTCATGGCCAGTTCACAGGGCTCATTGAGGGTCCCTGCTGATTTAGCTGGAAATGAAATCGTTCAGAAACTCATAACGGACAATCATCAGCTACGTGAGGCTCTGAAACGAAGCAATGATGCCCTCAAAGAGAGATGTGAAGAGATGGAGGGCTGGCAGAGGAGGTCAAGAGAAGAGCGAGAGTTCCTGAGCTGTAGATTTCGTGAGGCCAGAGAGTTAGTGCAGCGACTGGCCCAGGAAAACCAGAGCCTTTTAGGACAACTAAACCTGAGTGTCAGTCAAGCAGGGAGTCTGGGCATCTCCAAAGAAACTGGAAGTCAAGACCAAGAGCTGAAGTGCACCAATGCAGAGAAGAATGTCCTCATAGACTCACCAgaaGTATTAAATGCAGCTGTACTGACAGAATGCGCTGAAGGAGACACTGACAGACACACAATGCCTCAAAGTTTGCCTGCTGTGGGCTCTAATGATTTCCTGAAACTACTGAAAAGCCACAAAGAGAAGCTGGAGGAAGGCATGCGGGCTTTAAGGAGGAAGAATGAGGAGCTGGAGAAGGAGAAAGCAGAgaacgagaaagagagagagaatctcCTCGCTGCACTGGAGCAGTTGCGCTCCAAGCTGTCTCAGAATGTTGGGGTTACTGAAGAGTCAGTCCCGCCGACGTGTGCTGTCACTGTTCCTGCAGAAAGCTCTCACTTGGCTAACATAACTGAGCAGCTTCAGGCCACACAAGGCAGGTACAGGGAGCTGCAGGAGAAGCTGGATTGTCTTCAGAAGAATTCTTTTCAGAGAGACAGAACTGAGGCTCTCCTTAAACAGAAGGAGAAAGAGTTTGTTCAGGTACAAAAGGACAGTGAAGCGCTGAGATCGCAAGTAACGTCGCTTCTCGGAGAGCTGAACGAACGACAAAACTGGCTGGAGAAGAGCGAAGCAGAGAAACGAACCTTAGAAGACAAGCTGGTCACGAAGAGTGAGCGTCTGCAGACTGTAGAGAGAGAGATGGAGCAGCAGAAGAAGCAGCACAGCGTGACGGTAGACAATCTTTTACTGAAGACACAGAATCTGGAAGCCGCACTGAAGAACGAGAGGCTCGTCATAGTGGAGGAGAGGAGGAAGCTGGCCCAGCTCCAGCATGCATACACGTGTCTGTTTCAGGATTATGACAACAAACTTAAAAGCGAAAAACAAGCCAATCACAGGGGTGGAGAGACGGATACCCTTGCTAACAGGTTAGGGGAGGCTGAGAAAGCACTGGCCCTCAAACAGGAGCACATTGATAAACTCAAGGAGGAAATGGAGCAGCTGAGAGCTAAATTAGAGACCATACCGGTGCTGAACCATCAGgCAGAGATCTATAAGATGGACTTCTTGGCTGAGAGGGAAGCCAGAGAGAAACTCAATCAAAAGAAGGAAGAGTTGCAGGAGGATCTGAATAAGGCATTGGTCGAGATTGAAAGATTCAAGCAAGAAAGAACCTCACGAGCTCGCATTGAAGAGATGCAGCAGAGACACTTGGAGGACTACAGGCCTCGACCTCACCCGCCACCTCCAGCTGCACCTTTCCCAGGGCCAGCGATGTTCAATTCAGCCCAGCCTCCATCTGCACGCAGAAGAGACGAAGATCAAGAAGAGCTGCCGGATTACAGATGCCCCAAATGCATGTACAAGGCACCAGACATGGATACGCTGCAGATTCACGTCATGGACTGCATCCAGT

Function

symbol description
ikbkg Predicted to enable K63-linked polyubiquitin modification-dependent protein binding activity. Acts upstream of or within I-kappaB phosphorylation and positive regulation of I-kappaB kinase/NF-kappaB signaling. Predicted to be part of IkappaB kinase complex. Predicted to be active in cytoplasm and nucleus. Is expressed in periderm. Human ortholog(s) of this gene implicated in Behcet's disease; Bloch-Sulzberger syndrome; immunodeficiency 33; and learning disability. Orthologous to human IKBKG (inhibitor of nuclear factor kappa B kinase regulatory subunit gamma).

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0007252 I-kappaB phosphorylation biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0043122 regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0017119 Golgi transport complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0099023 vesicle tethering complex cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0008385 IkappaB kinase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0042393 histone binding molecular_function
GO:0070530 K63-linked polyubiquitin modification-dependent protein binding molecular_function
GO:0016740 transferase activity molecular_function
GO:0005515 protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko04010 MAPK signaling pathway
ko04014 Ras signaling pathway
ko04064 NF-kappa B signaling pathway
ko04668 TNF signaling pathway
ko04151 PI3K-Akt signaling pathway
ko04210 Apoptosis
ko04620 Toll-like receptor signaling pathway
ko04621 NOD-like receptor signaling pathway
ko04622 RIG-I-like receptor signaling pathway
ko04623 Cytosolic DNA-sensing pathway
ko04625 C-type lectin receptor signaling pathway
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko04657 IL-17 signaling pathway
ko04662 B cell receptor signaling pathway
ko04062 Chemokine signaling pathway
ko04920 Adipocytokine signaling pathway
ko04380 Osteoclast differentiation
ko05200 Pathways in cancer
ko05208 Chemical carcinogenesis - reactive oxygen species
ko05203 Viral carcinogenesis
ko05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
ko05212 Pancreatic cancer
ko05221 Acute myeloid leukemia
ko05220 Chronic myeloid leukemia
ko05215 Prostate cancer
ko05222 Small cell lung cancer
ko05166 Human T-cell leukemia virus 1 infection
ko05170 Human immunodeficiency virus 1 infection
ko05161 Hepatitis B
ko05160 Hepatitis C
ko05171 Coronavirus disease - COVID-19
ko05164 Influenza A
ko05162 Measles
ko05168 Herpes simplex virus 1 infection
ko05163 Human cytomegalovirus infection
ko05167 Kaposi sarcoma-associated herpesvirus infection
ko05169 Epstein-Barr virus infection
ko05165 Human papillomavirus infection
ko05120 Epithelial cell signaling in Helicobacter pylori infection
ko05130 Pathogenic Escherichia coli infection
ko05132 Salmonella infection
ko05131 Shigellosis
ko05135 Yersinia infection
ko05145 Toxoplasmosis
ko05142 Chagas disease
ko05340 Primary immunodeficiency
ko05010 Alzheimer disease
ko05417 Lipid and atherosclerosis
ko05418 Fluid shear stress and atherosclerosis
ko01523 Antifolate resistance
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-050327-68 Predicted to enable K63-linked polyubiquitin modification-dependent protein binding activity. Acts upstream of or within I-kappaB phosphorylation and positive regulation of I-kappaB kinase/NF-kappaB signaling. Predicted to be part of IkappaB kinase complex. Predicted to be active in cytoplasm and nucleus. Is expressed in periderm. Human ortholog(s) of this gene implicated in Behcet's disease; Bloch-Sulzberger syndrome; immunodeficiency 33; and learning disability. Orthologous to human IKBKG (inhibitor of nuclear factor kappa B kinase regulatory subunit gamma).

Ensembl:

ensembl_id ENSDARG00000017037

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043952 False 830 lncRNA 0.42 2 18574221 18578522
TCONS_00043953 False 2448 mRNA 0.48 13 18574274 18597704
TCONS_00043954 False 1812 mRNA 0.50 13 18574719 18595020
TCONS_00043955 False 1769 mRNA 0.50 12 18574719 18595025
TCONS_00043956 True 2054 mRNA 0.50 14 18574721 18597709

Neighbor

gene id symbol gene type direction distance location
XLOC_022263 ssr4 coding downstream 1536 18569291 ~ 18572685 (-)
XLOC_022262 sephs2 coding downstream 5699 18558209 ~ 18568522 (-)
XLOC_022261 NA coding downstream 158349 18386787 ~ 18415872 (-)
XLOC_022260 NA coding downstream 189053 18382297 ~ 18385168 (-)
XLOC_022259 hsd17b10 coding downstream 192860 18372048 ~ 18381361 (-)
XLOC_022265 zgc:158296 coding upstream 5478 18603187 ~ 18609475 (-)
XLOC_022266 CT027756.2 coding upstream 12307 18610016 ~ 18611010 (-)
XLOC_022267 CT027756.1 coding upstream 13418 18611127 ~ 18612421 (-)
XLOC_022268 arhgap4b coding upstream 18283 18615992 ~ 18668836 (-)
XLOC_022269 zgc:103759 coding upstream 104807 18702516 ~ 18707568 (-)
XLOC_022256 NA non-coding downstream 499802 18073715 ~ 18074419 (-)
XLOC_022255 dre-mir-135c-2 non-coding downstream 510922 18063173 ~ 18063299 (-)
XLOC_022251 NA non-coding downstream 688370 17881023 ~ 17885851 (-)
XLOC_022270 trpc4apb non-coding upstream 161833 18759542 ~ 18777957 (-)
XLOC_022272 NA non-coding upstream 271508 18869217 ~ 18898522 (-)
XLOC_022273 NA non-coding upstream 306965 18904674 ~ 18913159 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_05295894_05308912 SSR4, SSRD, IKBKG coding CI01000001 null 5295523 ~ 5308986 (-)