XLOC_022263 (ssr4)


Basic Information

Item Value
gene id XLOC_022263
gene name ssr4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 18569291 ~ 18572685 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043949
ATACACGTCATTCTTCCGCTGAGATGACGTGTCTGTCTGTGTTTCATTGGGTGAACAGACCCGAGTACTGCTCTCTTTTTAGGTTTGAGTGAGTAGAGATTCAACCAACAGCCCGGAGATCAACATGAAGCTAGTATTAACAACTCTTCTGGCTCTTTGTCTGAGCTTCTGTGCAGCTGAGACTTGCACAGACCCGGTGATTTCTCCGTCTTCATACACGACGACAGACGCGCTCATCTCCTCCGAGACTGTGTTCATCGTTGAACTGAGTCTGGCGTGTGCAAACGGGGCTCAGAGCGTCGCCCTGTACGCTGATGTCAATGGCAAGCAGTTCCCTGTGACCAGAGGCCAAGATGTTGGCAAATACCAGGTGTCATGGAGTGTTCCTCATAAGCAGGCCAGCTCAGGCACATATCAGGTCAAGTTCTTTGACGAGGAGTCTTACAGCACTCTACGAAAGGCTCAAAGAAACAATGAAGATGTCGACGCCATCAAGCCTTTGTTCTCTGTAAACGTGGATCACAggGGTGCGTGGAATGGTCCATGGGTGTCAACGGAGGTCTTGGCTGCACTGATTGGCATTATGGTTTACTACCTGGCCTACAGCACCAAAAGTGCCATCCAGGCTTAAGAAGAGAAGAATTGCCATTTCCATTGTTCAAACTGGTCTTCATTACATCTTCATCTCCATTACATATTTGACATTTAATGTGCAGATTTTACTGCCACGGAAACCATAGTTAGAACCTGACACAGATCAAAATATGGACAAAGACAATTATTATAAAGTGGTGttatgtttgctttgtttttttttttaatctgatatTGTCAAATAAAGGACAGAATTTTTCATTTGTGCTATTAATTTTAAACCTCAAAAGCTCTGAGGTGATTATCGGTGACTCCTCATCATCAAAGTCCAGTTCTGTGTTTTTGGAGTGTCCCAAATATCGATGAAATTCATTGAATGTGGGAATAAACAACTTTTCTGAAAGTTTTTCTGTCA
>TCONS_00043950
GCTTCTGTGCAGGTAATTAGCTTTTCCGTTAATTTAATATTGCACTCTTCATTCAGGTATTCGCGAACGATGAGGTGTCACATGCTAACGTACACTGAGACTTGCACAGACCCGGTGATTTCTCCGTCTTCATACACGACGACAGACGCGCTCATCTCCTCCGAGACTGTGTTCATCGTTGAACTGAGTCTGGCGTGTGCAAACGGGGCTCAGAGCGTCGCCCTGTACGCTGATGTCAATGGCAAGCAGTTCCCTGTGACCAGAGGCCAAGATGTTGGCAAATACCAGGTGTCATGGAGTGTTCCTCATAAGCAGGCCAGCTCAGGCACATATCAGGTCAAGTTCTTTGACGAGGAGTCTTACAGCACTCTACGAAAGGCTCAAAGAAACAATGAAGATGTCGACGCCATCAAGCCTTTGTTCTCTGTAAACGTGGATCACAggGGTGCGTGGAATGGTCCATGGGTGTCAACGGAGGTCTTGGCTGCACTGATTGGCATTATGGTTTACTACCTGGCCTACAGCACCAAAAGTGCCATCCAGGCTTAAGAAGAGAAGAATTGCCATTTCCATTGTTCAAACTGGTCTTCATTACATCTTCATCTCCATTACATATTTGACATTTAATGTGCAGATTTTACTGCCACGGAAACCATAGTTAGAACCTGACACAGATCAAAATATGGACAAAGACAATTATTATAAAGTGGTGttatgtttgctttgtttttttttttaatctgatatTGTCAAATAAAGGACAGAATTTTTCATTTGTGCTATTAATTTTAAACCTCAAAAGCTCTGAGGTGATTATCGGTGACTCCTCATCATCAAAGTCCAGTTCTGTGTTTTTGGAGTGTCCCAAATATCGATGAAATTCATTGAATGTGGGAATAAACAACTTTTC
>TCONS_00043951
GTTTCATTGGGTGAACAGACCCGAGTACTGCTCTCTTTTTAGGTTTGAGTGAGTAGAGATTCAACCAACAGCCCGGAGATCAACATGAAGCTAGTATTAACAACTCTTCTGGCTCTTTGTCTGAGCTTCTGTGCAGGTAATTAGCTTTTCCGTTAATTTAATATTGCACTCTTCATTCAGGTATTCGCGAACGATGAGGTGTCACATGCTAACGTACAGTAAATAAGTTCCGTTTTCTTTCTCTGTCGTCTAACGTTACTTGATTTCATTAAGCTGTTATTTTAGATAATGTATGCGTATTTTCCTCCTCAGCTGAGACTTGCACAGACCCGGTGATTTCTCCGTCTTCATACACGACGACAGACGCGCTCATCTCCTCCGAGACTGTGTTCATCGTTGAACTGAGTCTGGCGTGTGCAAACGGGGCTCAGAGCGTCGCCCTGTACGCTGATGTCAATGGCAAGCAGTTCCCTGTGACCAGAGGCCAAGATGTTGGCAAATACCAGGTGTCATGGAGTGTTCCTCATAAGCAGGCCAGCTCAGGCACATATCA

Function

symbol description
ssr4 Acts upstream of or within cellular response to estrogen stimulus. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Is expressed in several structures, including axis; endocrine system; hatching gland; notochord; and polster. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Iy. Orthologous to human SSR4 (signal sequence receptor subunit 4).

GO:

id name namespace
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum

ZFIN:

id description
ZDB-GENE-030131-4900 Acts upstream of or within cellular response to estrogen stimulus. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Is expressed in several structures, including axis; endocrine system; hatching gland; notochord; and polster. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Iy. Orthologous to human SSR4 (signal sequence receptor subunit 4).

Ensembl:

ensembl_id ENSDARG00000019444

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043949 False 1009 mRNA 0.44 6 18569291 18572685
TCONS_00043950 False 910 mRNA 0.43 6 18569308 18572521
TCONS_00043951 True 553 lncRNA 0.46 3 18571659 18572645

Neighbor

gene id symbol gene type direction distance location
XLOC_022262 sephs2 coding downstream 769 18558209 ~ 18568522 (-)
XLOC_022261 NA coding downstream 153419 18386787 ~ 18415872 (-)
XLOC_022260 NA coding downstream 184123 18382297 ~ 18385168 (-)
XLOC_022259 hsd17b10 coding downstream 187930 18372048 ~ 18381361 (-)
XLOC_022258 tafa1a coding downstream 281673 18177281 ~ 18287618 (-)
XLOC_022264 ikbkg coding upstream 1536 18574221 ~ 18597709 (-)
XLOC_022265 zgc:158296 coding upstream 30502 18603187 ~ 18609475 (-)
XLOC_022266 CT027756.2 coding upstream 37331 18610016 ~ 18611010 (-)
XLOC_022267 CT027756.1 coding upstream 38442 18611127 ~ 18612421 (-)
XLOC_022268 arhgap4b coding upstream 43307 18615992 ~ 18668836 (-)
XLOC_022256 NA non-coding downstream 494872 18073715 ~ 18074419 (-)
XLOC_022255 dre-mir-135c-2 non-coding downstream 505992 18063173 ~ 18063299 (-)
XLOC_022251 NA non-coding downstream 683440 17881023 ~ 17885851 (-)
XLOC_022270 trpc4apb non-coding upstream 186857 18759542 ~ 18777957 (-)
XLOC_022272 NA non-coding upstream 296532 18869217 ~ 18898522 (-)
XLOC_022273 NA non-coding upstream 331989 18904674 ~ 18913159 (-)

Expression


Co-expression Network