XLOC_022268 (arhgap4b)


Basic Information

Item Value
gene id XLOC_022268
gene name arhgap4b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 18615992 ~ 18668836 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043960
ATGACTTCACATGGAAAACTGAGAAAGGAAAAGGGGAGTCTGGCGGAGTATGAGACTCAAATCAAAGAGGTGCGTGGTCAGCTCTCAGAGCAGCTTAAGATCCTAGACGCGCAGCTGGAGGTCAAGACACAACAGCTGCAGGATATGAGCGAGTACCTGCGCAGACGAGGAGAGATTGAGGCTGAATATGCCCGATCTCTGGAGAAACTGAGTGAGAAGTTCACAGTGAAGACCAAGAGAAAGGAGCAGTTGGACCTGTCGGTGGCTCAGTGCTGGTCTGTTCTTCTGACCCAAACCAGGCAGGAGAGCCGAGATCACAGTTCACTCAGTGAGCTCTGTGGCAACACACTCACGCAGCGCCTCTCACACTGCATAGAGGACACACACCGCCTGGCAAAGCGGAGCAAGGAGGTTGGACTCCAGATGCAGGATGAGCTTTTGAAAATCACCACAGAGCTGCAGACGGCTTTGAAAACTTATCATCAATACCACATCGACTGTCTGGCTGCAGAAGGCAAGCTCAAAGAAGCCACGCGACTAGAAGAGAAGCAGACGGGCAAACGCAGTTCTGTCAAAAAAATGGAGAGACTGATGGAGAAGAGACAAGGCAAAGTACAGGAAACCCAGCTGAAGTGCACTAAAGCTCGCAACGACTACTTGCTCAACTTGGCAGCAGCTAATGCCTCCATGAATAAATACTATCTGCAGGACATTTGCACGCTGATTGATTGCACAGATCTGGGGTACCACCTGTCTGTGACGCGGGTTATACGCGGATACCTCTCATACAAAAACCGAATCGTCCAGAATATGAAGAATGGCCTTCAGCAGCTGGACACTGCGGTGACTGGACTCAACCAGGGTCAGGATAGAGACTCTCTGCTGCAGGCCCACAACATCGCTTTCTGCCTGCCCTTCCGCTTTCAGTACCAGCCCCATGAAGGAGATCAGgtGTGTGAGGTGAGCGCTGAAGGCCAGGTGAGATATGAGCTCGATACCAGGTTCCAGCAGCTGCAGTCCAGACTGGCATCTGTTACCCTCGAAACTGATGAGGTCAGCAAGACCCTTAAAGCAACCCACTCAAACCTGCTGGAGAGCGTCTGTGATGACGACTGCAACCCCGCTCCAGATGCCTCCAGTACCCCGTCAGTGGAGGGCACTGCGGACGGCACAGGAACAAAGCCCAGTCTCGCCAAACGTAGAGCCAATCAGCAGGACACCGAGACTTTCTACTTCACGaaAGTGAAGGAGCATGTAAGTGGCAGCTCTCTGATCTCGAAACTCCAAGCCAAGCATGACCTACTTAAAGAGGCCATACAGAAAGCTGAGGCCATTGATAGCGACCCCTCCAGAATGCAGCCTGGTAGGGCAGTGCGTGTGCGGAAAGCCAGGCCCTGCTCCCAGTACAACCACAAACTCTTCTCTGGAGACATGCTCTCCTTCATTCAGtcctTCTGTCAGAGCTCAGGGCAGCAGATCCCCCTGGTGGTTGAAAGCTGCATTCGCTTCATCAACCTGCATGgtcTTCATCATGAAGGCATTTTTAGGGTTCCTGGATCACAGACTGAAGTTAATCATATCAGGGATGCTTTTGAAAGAGGCGAAGACCCACTCACTGACAGCGAGAGTGACATTGATTCAGTGGCGGGGGTCCTGAAGCTCTATTTCAGAGGACTGGAGAAACCTCTGTTCCCTGAGGAGAGCTTTAGCCAGCTCATGGAGTGTGTCCAAATGGAAAACATGACCGAAAAAGTAGCGCAGATAAAGTCAGTAGTGTCGTCCTATCCCAGACCTGTCATCATAGTGATGCGGTATCTCTTCGCCTTCCTTCATCACGTCTCTCAGTACAGTGATGAGAACATGATGCAGCCGTATAATCTGGCTGTCTGCTTCGGGCCCAGTCTGCTCCGAGGCGTAGAGATGGGTGGTGACGAGGTGACCCTGGCTCCTCAGATCAATGAGCTGGTCAAAACCATGATCCTTCATCATGAGAACATCTTCCCAGGACCTTCTGAACTTCCAGGCCCCGTTTATGAGAAGTGCATGACTTTGGAGCAGGAGTACTGtgaACCCATCACAGAGGAGGGCGAAGGAGACCCTGAACATCTTCCCAGTGAAGATGagtggGAGGCTGTGGCCATGTTTGATTATGTTGCACGCTCTGCAGCCGAGCTGTCATTCAAGCAGGGTGAGCACCTCCTACTGCACAGCAAGGcctcagctgattggtggagaggggaAGTGGGAGGAATGAAAGGCTTGATCCCCCATAAGTACATCAGTGTGGTAGAAGGGATGGAGCGTAAGGACCGGGGAAAGAAGGAGGACAGTAGAGGGGGAAGCACAGGAAACCTAGCAGAGGAGCAGCAGCAACAGTCTGAACACAGCACTCGTATGCGAGTGAACAGCGACAGCGCATCTTTGCCCGGCCGGCAGAGGACCGGCAGTGGAAGCAGCGGCAGCATTGGTGGAGGAAACAGTGGGAATATGAGCCCTGTACGAAAGCTCACCCTGCAGGTGCCTGAGGGACGGCTCATGCTTCCTCCTCAGACCACTGCAGTCGCACGCCAATTCTCAGGTCATCAGGAGCGCAGACACACTTTAGACTCTCTGAGGCCAGTAGGAgctccagacagacagacagtacatATCGACAAGGAGGTCAGTCGTCAGATGAACTCCGTGTTTAAGGAGCTGTTGTCTCGTCAGCCTCCTCAAGAGGCCTTGGGTTCGAGCGCTTCTCCATCCTCTCCTCCTGCTTCTGTCCCATCCATCCCATCGGTCTCCTCTGCTGCTGCTCGACCTCCGGTGAAGAAGGGAGGCTTTGGCCTGCGCAGCAGAGGCCTCTTCAAACCCCAGGACCAACAGGACTGAAGGAGTGTTGTGGGAACGGCACGCTCATCACAGATATGAATCTATTTTTCCAGACATACAATATATTTGTCTCTTTTTGCGCCTTATTGACCGATGGATTTCTGTTGACAGTGACTGATTTCGGTTTTGTTTCGCGTGAGACCAAGTCGTTGATCCTATTATcggttgtgtttgtgttttagctTTGACAGTTATTCAGGTCCTCAAGTCGAGATTCTTCCCATCGCAGTGATGTCCAACGTGTCTGTCGTTTTTTGACTGTAGTGTGTAGACCCTGTTTTAATATCTGCCGATGATGTACTGGAAGACAAAGTGTCGAGTCCCACAAAAGCTCAGATGATTCTGATCGACAAGTGAATTGTGGGAATGATGTCCGTGACAGACAGAGTCCACATTATTGTTTTAGATCTAGACGTGTCACCCTGAATGTAGCAAGTGATTCATGAAGGCCGACATCACACTCACTCTGATTTCTACTTCATTTGGAGTTTTAAACAGTTAGTTCACCACAAAATTCTGTCCTTGTGTGCTCACCTACctcattcatcttcagaaaacaCATGAAGGTTTTTTTTAGTAAGATCTCAGAGATTTCTGATTCTCTGTTTAAGTTGTTCACCcaaaggaataaaaaataaacccatttaaatCAAGCATTTTAATCCCAGGCTTTTTAAGACAAGACAACCGCTTTATATGAAGAACAGATTTATGCAaggaatttatttataaataaacattgatcCGTTACGATGTATACAGGAATTAGAAGTCATTGAAGCTTAAGTGTGCTTGCTTGAACTGTGACAGCCAATGACTGTGCCACATAGCAGTTTTGAACTTCTGCAAGATCCAATGAAGTTTGTTCTTGCATCACACTCGTTTTAATTATCCACAACAGCCAATGAGGTTCAGTACTGTGTGCCACACCCCTTTGATCTTCCATAACAACCAATAAGGTTTGTTCTTGCTTGTTCACATGGCACATTTCAGCTTCCTCAAGGACCAATAAGGTCTGAGCTTGCATGTTCTGTTTATGTTGACTGATCAATGTTAATATGTGCTATATTTGGTTTCTTTCTGAAGATTTGACTCAAgaatatttctttttatatctgtttacaaacattttgaggcGTTTTGAATGAACGAACTTAATAAAAGGACAGA
>TCONS_00043961
ATGACTTCACATGGAAAACTGAGAAAGGAAAAGGGGAGTCTGGCGGAGTATGAGACTCAAATCAAAGAGGTGCGTGGTCAGCTCTCAGAGCAGCTTAAGATCCTAGACGCGCAGCTGGAGGTCAAGACACAACAGCTGCAGGATATGAGCGAGTACCTGCGCAGACGAGGAGAGATTGAGGCTGAATATGCCCGATCTCTGGAGAAACTGAGTGAGAAGTTCACAGTGAAGACCAAGAGAAAGGAGCAGTTGGACCTGTCGGTGGCTCAGTGCTGGTCTGTTCTTCTGACCCAAACCAGGCAGGAGAGCCGAGATCACAGTTCACTCAGTGAGCTCTGTGGCAACACACTCACGCAGCGCCTCTCACACTGCATAGAGGACACACACCGCCTGGCAAAGCGGAGCAAGGAGGTTGGACTCCAGATGCAGGATGAGCTTTTGAAAATCACCACAGAGCTGCAGACGGCTTTGAAAACTTATCATCAATACCACATCGACTGTCTGGCTGCAGAAGGCAAGCTCAAAGAAGCCACGCGACTAGAAGAGAAGCAGACGGGCAAGTCAGCTGATCTCGGCCTCAGCCAATCAGGAGGGCAAAGACGCAGTTCTGTCAAAAAAATGGAGAGACTGATGGAGAAGAGACAAGGCAAAGTACAGGAAACCCAGCTGAAGTGCACTAAAGCTCGCAACGACTACTTGCTCAACTTGGCAGCAGCTAATGCCTCCATGAATAAATACTATCTGCAGGACATTTGCACGCTGATTGATTGCACAGATCTGGGGTACCACCTGTCTGTGACGCGGGTTATACGCGGATACCTCTCATACAAAAACCGAATCGTCCAGAATATGAAGAATGGCCTTCAGCAGCTGGACACTGCGGTGACTGGACTCAACCAGGGTCAGGATAGAGACTCTCTGCTGCAGGCCCACAACATCGCTTTCTGCCTGCCCTTCCGCTTTCAGTACCAGCCCCATGAAGGAGATCAGgtGTGTGAGGTGAGCGCTGAAGGCCAGGTGAGATATGAGCTCGATACCAGGTTCCAGCAGCTGCAGTCCAGACTGGCATCTGTTACCCTCGAAACTGATGAGGTCAGCAAGACCCTTAAAGCAACCCACTCAAACCTGCTGGAGAGCGTCTGTGATGACGACTGCAACCCCGCTCCAGATGCCTCCAGTACCCCGTCAGTGGAGGGCACTGCGGACGGCACAGGAACAAAGCCCAGTCTCGCCAAACGTAGAGCCAATCAGCAGGACACCGAGACTTTCTACTTCACGaaAGTGAAGGAGCATGTAAGTGGCAGCTCTCTGATCTCGAAACTCCAAGCCAAGCATGACCTACTTAAAGAGGCCATACAGAAAGCTGAGGCCATTGATAGCGACCCCTCCAGAATGCAGCCTGGTAGGGCAGTGCGTGTGCGGAAAGCCAGGCCCTGCTCCCAGTACAACCACAAACTCTTCTCTGGAGACATGCTCTCCTTCATTCAGAGCTCAGGGCAGCAGATCCCCCTGGTGGTTGAAAGCTGCATTCGCTTCATCAACCTGCATGgtcTTCATCATGAAGGCATTTTTAGGGTTCCTGGATCACAGACTGAAGTTAATCATATCAGGGATGCTTTTGAAAGAGGCGAAGACCCACTCACTGACAGCGAGAGTGACATTGATTCAGTGGCGGGGGTCCTGAAGCTCTATTTCAGAGGACTGGAGAAACCTCTGTTCCCTGAGGAGAGCTTTAGCCAGCTCATGGAGTGTGTCCAAATGGAAAACATGACCGAAAAAGTAGCGCAGATAAAGTCAGTAGTGTCGTCCTATCCCAGACCTGTCATCATAGTGATGCGGTATCTCTTCGCCTTCCTTCATCACGTCTCTCAGTACAGTGATGAGAACATGATGCAGCCGTATAATCTGGCTGTCTGCTTCGGGCCCAGTCTGCTCCGAGGCGTAGAGATGGGTGGTGACGAGGTGACCCTGGCTCCTCAGATCAATGAGCTGGTCAAAACCATGATCCTTCATCATGAGAACATCTTCCCAGGACCTTCTGAACTTCCAGGCCCCGTTTATGAGAAGTGCATGACTTTGGAGCAGGAGTACTGtgaACCCATCACAGAGGAGGGCGAAGGAGACCCTGAACATCTTCCCAGTGAAGATGagtggGAGGCTGTGGCCATGTTTGATTATGTTGCACGCTCTGCAGCCGAGCTGTCATTCAAGCAGGGTGAGCACCTCCTACTGCACAGCAAGGcctcagctgattggtggagaggggaAGTGGGAGGAATGAAAGGCTTGATCCCCCATAAGTACATCAGTGTGGTAGAAGGGATGGAGCGTAAGGACCGGGGAAAGAAGGAGGACAGTAGAGGGGGAAGCACAGGAAACCTAGCAGAGGAGCAGCAGCAACAGTCTGAACACAGCACTCGTATGCGAGTGAACAGCGACAGCGCATCTTTGCCCGGCCGGCAGAGGACCGGCAGTGGAAGCAGCGGCAGCATTGGTGGAGGAAACAGTGGGAATATGAGCCCTGTACGAAAGCTCACCCTGCAGGTGCCTGAGGGACGGCTCATGCTTCCTCCTCAGACCACTGCAGTCGCACGCCAATTCTCAGGTCATCAGGAGCGCAGACACACTTTAGACTCTCTGAGGCCAGTAGGAgctccagacagacagacagtacatATCGACAAGGAGGTCAGTCGTCAGATGAACTCCGTGTTTAAGGAGCTGTTGTCTCGTCAGCCTCCTCAAGAGGCCTTGGGTTCGAGCGCTTCTCCATCCTCTCCTCCTGCTTCTGTCCCATCCATCCCATCGGTCTCCTCTGCTGCTGCTCGACCTCCGGTGAAGAAGGGAGGCTTTGGCCTGCGCAGCAGAGGCCTCTTCAAACCCCAGGACCAACAGGACTGA

Function

symbol description
arhgap4b Predicted to be involved in negative regulation of cell migration. Predicted to act upstream of or within signal transduction. Predicted to be active in cytoplasm. Orthologous to human ARHGAP4 (Rho GTPase activating protein 4).

GO:

id name namespace
GO:0030336 negative regulation of cell migration biological_process
GO:0007165 signal transduction biological_process
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090311-38 Predicted to be involved in negative regulation of cell migration. Predicted to act upstream of or within signal transduction. Predicted to be active in cytoplasm. Orthologous to human ARHGAP4 (Rho GTPase activating protein 4).

Ensembl:

ensembl_id ENSDARG00000015003

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043960 False 4044 mRNA 0.49 24 18615992 18668836
TCONS_00043961 True 2901 mRNA 0.53 23 18617162 18668836

Neighbor

gene id symbol gene type direction distance location
XLOC_022267 CT027756.1 coding downstream 3571 18611127 ~ 18612421 (-)
XLOC_022266 CT027756.2 coding downstream 4982 18610016 ~ 18611010 (-)
XLOC_022265 zgc:158296 coding downstream 6517 18603187 ~ 18609475 (-)
XLOC_022264 ikbkg coding downstream 18283 18574221 ~ 18597709 (-)
XLOC_022263 ssr4 coding downstream 43307 18569291 ~ 18572685 (-)
XLOC_022269 zgc:103759 coding upstream 33680 18702516 ~ 18707568 (-)
XLOC_022270 trpc4apb coding upstream 90706 18759542 ~ 18777957 (-)
XLOC_022271 nsfl1c coding upstream 121822 18790658 ~ 18805655 (-)
XLOC_022272 NA coding upstream 200381 18869217 ~ 18898522 (-)
XLOC_022273 NA coding upstream 235838 18904674 ~ 18913159 (-)
XLOC_022261 NA non-coding downstream 200120 18386787 ~ 18415872 (-)
XLOC_022260 NA non-coding downstream 230824 18382297 ~ 18385168 (-)
XLOC_022256 NA non-coding downstream 541573 18073715 ~ 18074419 (-)
XLOC_022274 NA non-coding upstream 261077 18929913 ~ 18942050 (-)
XLOC_022283 CR388168.3 non-coding upstream 639960 19308796 ~ 19308910 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_05318747_05341451 ARHGAP4B coding CI01000001 null 5317514 ~ 5341773 (-)
bowfin (Amia calva) AMCG00009788 NA coding CM030126.1 CM030126.1 46129110 ~ 46151694 (-)